Mercurial > repos > peterjc > effectivet3

comparison tools/effectiveT3/tool_dependencies.xml @ 8:60a9b3f760cc draft

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v0.0.17 Used cached URL, python style updates
author peterjc
date Wed, 01 Feb 2017 09:22:21 -0500
parents 5f85301d50bf
children a46d7861c32c
comparison
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7:5f85301d50bf 8:60a9b3f760cc
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="effectiveT3" version="1.0.1"> 3 <package name="effectiveT3" version="1.0.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <!-- Set environment variable so Python script knows where to look --> 6 <!-- Main JAR file -->
7 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_GUI-1.0.1.jar -->
8 <action type="download_file" sha256sum="5a811a86a14dffbc5ae91dc45f40791642b8866266ffd2337b97d4c298129cab" target_filename="TTSS_GUI-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_GUI/TTSS_GUI_1.0.1_src_all.jar</action>
9 <action type="move_file"><source>TTSS_GUI-1.0.1.jar</source><destination>$INSTALL_DIR</destination></action>
10 <!-- Model specific JAR files -->
11 <action type="make_directory">$INSTALL_DIR/module</action>
12 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_ANIMAL-1.0.1.jar -->
13 <action type="download_file" sha256sum="3d9cd8e805387d2dfa855076b3d5f7f97334aa612288075111329fb036c94e34" target_filename="TTSS_ANIMAL-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_ANIMAL/TTSS_ANIMAL_1.0.1_src_all.jar</action>
14 <action type="move_file"><source>TTSS_ANIMAL-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>
15 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_PLANT-1.0.1.jar -->
16 <action type="download_file" sha256sum="593f0052ace030c2fa16cf336f3916a21bc2addbaefdfa149b084b1425e42a13" target_filename="TTSS_PLANT-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_PLANT/TTSS_PLANT_1.0.1_src_all.jar</action>
17 <action type="move_file"><source>TTSS_PLANT-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>
18 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_STD-1.0.1.jar -->
19 <action type="download_file" sha256sum="865809e5ead6d8bb038e854ccaebc7c102b72738ff3557553af9b9ac8e529336" target_filename="TTSS_STD-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_STD/TTSS_STD_1.0.1_src_all.jar</action>
20 <action type="move_file"><source>TTSS_STD-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>
21 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_STD-2.0.2.jar -->
22 <action type="download_file" sha256sum="860c6e3680fa1f3c6ac2362605205af4cdd9a1caefee59fdbd37d1453c9bad44" target_filename="TTSS_STD-2.0.2.jar">https://depot.galaxyproject.org/software/TTSS_STD/TTSS_STD_2.0.2_src_all.jar</action>
23 <action type="move_file"><source>TTSS_STD-2.0.2.jar</source><destination>$INSTALL_DIR/module/</destination></action>
24 <!-- Make this accessible -->
7 <action type="set_environment"> 25 <action type="set_environment">
8 <environment_variable name="EFFECTIVET3" action="set_to">$INSTALL_DIR</environment_variable> 26 <environment_variable name="EFFECTIVET3" action="set_to">$INSTALL_DIR</environment_variable>
9 </action> 27 </action>
10 <!-- Main JAR file -->
11 <action type="shell_command">wget http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_GUI-1.0.1.jar</action>
12 <!-- If using action type download_file will need to move the file,
13 <action type="move_file"><source>TTSS_GUI-1.0.1.jar</source><destination>$INSTALL_DIR/</destination></action>
14 -->
15 <!-- Three model JAR files -->
16 <action type="make_directory">$INSTALL_DIR/module</action>
17 <action type="shell_command">wget http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_ANIMAL-1.0.1.jar</action>
18 <action type="move_file"><source>TTSS_ANIMAL-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>
19 <action type="shell_command">wget http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_PLANT-1.0.1.jar</action>
20 <action type="move_file"><source>TTSS_PLANT-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>
21 <action type="shell_command">wget http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_STD-1.0.1.jar</action>
22 <action type="move_file"><source>TTSS_STD-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>
23 <action type="shell_command">wget http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_STD-2.0.2.jar</action>
24 <action type="move_file"><source>TTSS_STD-2.0.2.jar</source><destination>$INSTALL_DIR/module/</destination></action>
25 </actions> 28 </actions>
26 </install> 29 </install>
27 <readme> 30 <readme>
28 Downloads effectiveT3 v1.0.1 and associated models from http://effectors.org/ aka http://effectors.csb.univie.ac.at/ 31 Downloads effectiveT3 v1.0.1 and associated models from http://effectors.org/ aka http://effectors.csb.univie.ac.at/
32
33 Sets environment variable $EFFECTIVET3 to the directory containing the main JAR file whose subdirectory module/ holds the model JAR files.
29 </readme> 34 </readme>
30 </package> 35 </package>
31 </tool_dependency> 36 </tool_dependency>
32 37