annotate test-data/ecoli.mira4_de_novo.fasta @ 0:6a88b42ce6b9 draft

Uploaded v0.0.4, previously only on the TestToolShed
author peterjc
date Fri, 21 Nov 2014 06:42:56 -0500
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children
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6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
1 >MIRA_c1
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
2 gccagggctattttaccggcgcagtatcgccgccaggattgcattgcgcacgggcgacat
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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3 ctggcaggcttcattcacgcctgctattcccgtcagcctgagcttgccgcgaagctgatg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
4 aaagatgttatcgctgaaccctaccgtgaacggttactgccaggcttccggcaggcgcgg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
5 caggcggtcgcggaaatcggcgcggtagcgagcggtatctccggctccggcccgaccttg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
6 ttcgctctgtgtgacaagccggaaaccgcccagcgcgttgccgactggttgggtaagaac
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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7 tacctgcaaaatcaggaaggttttgttcatatttgccggctggatacggcgggcgcacga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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8 gtactggaaaactaaatgaaactctacaatctgaaagatcacaacgagcaggtcagcttt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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9 gcgcaagccgtaacccaggggttgggcaaaaatcaggggctgttttttccgcacgacctg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
10 ccggaattcagcctgactgaaattgatgagatgctgaagctggattttgtcacccgcagt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
11 gcgaagatcctctcggcgtttattggtgatgaaatcccacaggaaatcctggaagagcgc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
12 gtgcgcgcggcgtttgccttcccggctccggtcgccaatgttgaaagcgatgtcggttgt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
13 ctggaattgttccacgggccaacgctggcatttaaagatttcggcggtcgctttatggca
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
14 caaatgctgacccatattgcgggtgataagccagtgaccattctgaccgcgacctccggt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
15 gataccggagcggcagtggctcatgctttctacggtttaccgaatgtgaaagtggttatc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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16 ctctatccacgaggcaaaatcagtccactgcaagaaaaactgttctgtacattgggcggc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
17 aatatcgaaactgttgccatcgacggcgatttcgatgcctgtcaggcgctggtgaagcag
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
18 gcgtttgatgatgaagaactgaaagtggcgctagggttaaactcggctaactcgattaac
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
19 atcagccgtttgctggcgcagatttgctactactttgaagctgttgcgcagctgccgcag
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
20 gagacgcgcaaccagctggttgtctcggtgccaagcggaaacttcggcgatttgacggcg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
21 ggtctgctggcgaagtcactcggtctgccggtgaaacgttttattgctgcgaccaacgtg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
22 aacgataccgtgccacgtttcctgcacgacggtcagtggtcacccaaagcgactcaggcg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
23 acgttatccaacgcgatggacgtgagtcagccgaacaactggccgcgtgtggaagagttg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
24 ttccgccgcaaaatctggcaactgaaagagctgggttatgcagccgtggatgatgaaacc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
25 acgcaacagacaatgcgtgagttaaaagaactgggctacacttcggagccgcacgctgcc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
26 gtagcttatcgtgcgctgcgtgatcagttgaatccaggcgaatatggcttgttcctcggc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
27 accgcgcatccggcgaaatttaaagagagcgtggaagcgattctcggtgaaacgttggat
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
28 ctgccaaaagagctggcagaacgtgctgatttacccttgctttcacataatctgcccgcc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
29 gattttgctgcgttgcgtaaattgatgatgaatcatcagtaaaatctattcattatctca
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
30 atagcttttcattctgactgcaacgggcaatatgtctctgtgtggattaaaaaaagagtg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
31 tctgatagcagcttctgaactggttacctgccgtgagtaaattaaaattttattgactta
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
32 ggtcactaaatactttaaccaatataggcatagcgcacagacagataaaaattacagagt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
33 acacaacatccatgaaacgcattagcaccaccattaccaccaccatcaccattaccacaa
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
34 cggtgcgggctgacgcgtacaggaaacacagaaaaaagcccgcacctgacagtgcgggct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
35 ttttttttcgaccaaaggtaacgaggtaacaaccatgcgagagttgaagttcggcggtac
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
36 atcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccag
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
37 gcaggggcaggtggccaccgtcctctctgcccccgccaaaacaccaaccacctggtggcg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
38 atgattgaaaaaaccattagcggccaggatgctttacccaatatcagcgatgccgaacgt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
39 atttttgccgaacttttgacgggactcgccgccgcccagccggggttcccgctggcgacg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
40 tcaattgaaaactttcgtcgatcaggaatttgcccaaataaaacatgtcctgcatggcat
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
41 tagtttgttggggcagtgcccggatagcatcaacgctgcgctgatttgccgtggcgagaa
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
42 aatgtcgatcgccgttatggccggcgtattagaagcgcgcggtcacaacgttactgttat
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
43 cgatccggtcgaaaaactgctggcagtggggcattacctcgaatctaccgtcgatattgc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
44 tgagtccacccgccgtattgcggcaagccgcattccggctgatcacatggtgctgatggc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
45 aggtttcaccgccggtaatgaaaaaggcgaactggtggtgcttggacgcaacggttccga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
46 ctactctgctgcggtgctggctgcctgtttacgcgccgattgttgcgagatttggacgga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
47 cgttgacggggtctatacctgcgacccgcgtcaggtgcccgatgcgaggttgttgaagtc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
48 gatgtcctaccaggaagcgatggagctttcctacttcggcgctaaagttcttcacccccg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
49 caccattacccccatcgcccagttccagatcccttgcctgattaaaaataccggaaatcc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
50 tcaagcaccaggtacgctcattggtgccagccgtgatgaagacgaattaccggtcaaggg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
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diff changeset
51 catttccaatctgaataacatggcaatgttcagcgtttctggtccggggatgaaagggat
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
52 ggtcggcatggcggcgcgcgtctttgcagcgatgtcacgcgcccgtatttccgtggtgct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
53 gattacgcaatcatcttccgaatacagcatcagtttctgcgttccacaaagcgactgtgt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
54 gcgagctgaacgggcaatgcaggaagagttctacctggaactgaaagaaggcttactgga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
55 gccgctggcagtgacggaacggctggccattatctcggtggtaggtgatggtatgcgcac
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
56 cttgcgtgggatctcggcgaaattctttgccgcactggcccgcgccaatatcaacattgt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
57 cgccattgctcagggatcttctgaacgctcaatctctgtcgtggtaaataacgatgatgc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
58 gaccactggcgtgcgcgttactcatcagatgctgttcaataccgatcaggttatcgaagt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
59 gtttgtgattggcgtcggtggcgttggcggtgcgctgctggagcaactgaagcgtcagca
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
60 aagctggctgaagaataaacatatcgacttacgtgtctgcggtgttgccaactcgaaggc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
61 tctgctcaccaatgtacatggccttaatctggaaaactggcaggaagaactggcgcaagc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
62 caaagagccgtttaatctcgggcgcttaattcgcctcgtgaaagaatatcatctgctgaa
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
63 cccggtcattgttgactgcacttccagccaggcagtggcggatcaatatgccgacttcct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
64 gcgcgaaggtttccacgttgtcacgccgaacaaaaaggccaacacctcgtcgatggatta
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
65 ctaccatcagttgcgttatgcggcggaaaaatcgcggcgtaaattcctctatgacaccaa
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
66 cgttggggctggattaccggttattgagaacctgcaaaatctgctcaatgcaggtgatga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
67 attgatgaagttctccggcattctttctggttcgctttcttatatcttcggcaagttaga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
68 cgaaggcatgagtttctccgaggcgaccacgctggcgcgggaaatgggttataccgaacc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
69 ggacccgcgagatgatctttctggtatggatgtggcgcgtaaactattgattctcgctcg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
70 tgaaacgggacgtgaactggagctggcggatattgaaattgaacctgtgctgcccgcaga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
71 gtttaacgccgagggtgatgttgccgcttttatggcgaatctgtcacaactcgacgatct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
72 ctttgccgcgcgcgtggcgaaggcccgtgatgaaggaaaagttttgcgctatgttggcaa
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
73 tattgatgaagatggcgtctgccgcgtgaagattgccgaagtggatggtaatgatccgct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
74 gttcaaagtgaaaaatggcgaaaacgccctggccttctatagccactattatcagccgct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
75 gccgttggtactgcgcggatatggtgcgggcaatgacgttacagctgccggtgtctttgc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
76 tgatctgctacgtaccctctcatggaagttaggagtctgacatggttaaagtttatgccc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
77 cggcttccagtgccaatatgagcgtcgggtttgatgtgctcggggcggcggtgacacctg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
78 ttgatggtgcattgctcggagatgtagtcacggttgaggcggcagagacattcagtctca
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
79 acaacctcggacgctttgccgataagctgccgtcagaaccacgggaaaatatcgtttatc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
80 agtgctgggagcgtttttgccaggaactgggtaagcaaattccagtggcgatgaccctgg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
81 aaaagaatatgccgatcggttcgggcttaggctccagtgcctgttcggtggtcgcggcgc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
82 tgatggcgatgaatgaacactgcggcaagccgcttaatgacactcgtttgctggctttga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
83 tgggcgagctggaaggccgtatctccggcagcattcattacgacaacgtggcaccgtgtt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
84 ttctcggtggtatgcagttgatgatcgaagaaaacgacatcatcagccagcaagtgccag
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
85 ggtttgatgagtggctgtgggtgctggcgtatccggggattaaagtctcgacggcagaag
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
86 ccagggctattttaccggcgcagtatcgccgcca