Mercurial > repos > peterjc > tmhmm_and_signalp

comparison tools/protein_analysis/seq_analysis_utils.py @ 7:9b45a8743100 draft

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Uploaded v0.1.0, which adds a wrapper for Promoter 2.0 (DNA tool) and enables use of Galaxy's <parallelism> tag for SignalP, TMHMM X Promoter wrappers.
author peterjc
date Mon, 30 Jul 2012 10:25:07 -0400
parents a290c6d4e658
children e52220a9ddad
comparison
equal deleted inserted replaced
6:a290c6d4e658 7:9b45a8743100
98 pass 98 pass
99 for f in files: 99 for f in files:
100 if os.path.isfile(f): 100 if os.path.isfile(f):
101 os.remove(f) 101 os.remove(f)
102 raise err 102 raise err
103 for f in files:
104 assert os.path.isfile(f), "Missing split file %r (!??)" % f
103 return files 105 return files
104 106
105 def run_jobs(jobs, threads, pause=10, verbose=False): 107 def run_jobs(jobs, threads, pause=10, verbose=False):
106 """Takes list of cmd strings, returns dict with error levels.""" 108 """Takes list of cmd strings, returns dict with error levels."""
107 pending = jobs[:] 109 pending = jobs[:]