Mercurial > repos > peterjc > tmhmm_and_signalp

comparison tools/protein_analysis/rxlr_motifs.xml @ 9:e52220a9ddad draft

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Uploaded v0.1.2 Use the new <stdio> settings in the XML wrappers to catch errors. Obeys SGE style XNSLOTS environment variable for thread count (otherwise default to 4).
author peterjc
date Fri, 25 Jan 2013 06:08:31 -0500
parents 9b45a8743100
children 7de64c8b258d
comparison
equal deleted inserted replaced
8:976a5f2833cd 9:e52220a9ddad
1 <tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.5"> 1 <tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.6">
2 <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description> 2 <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description>
3 <command interpreter="python"> 3 <command interpreter="python">
4 rxlr_motifs.py $fasta_file 8 $model $tabular_file 4 rxlr_motifs.py $fasta_file 8 $model $tabular_file
5 ##I want the number of threads to be a Galaxy config option... 5 ##I want the number of threads to be a Galaxy config option...
6 </command> 6 </command>
7 <stdio>
8 <!-- Anything other than zero is an error -->
9 <exit_code range="1:" />
10 <exit_code range=":-1" />
11 </stdio>
7 <inputs> 12 <inputs>
8 <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences" /> 13 <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences" />
9 <param name="model" type="select" label="Which RXLR model?"> 14 <param name="model" type="select" label="Which RXLR model?">
10 <option value="Bhattacharjee2006">Bhattacharjee et al. (2006) RXLR</option> 15 <option value="Bhattacharjee2006">Bhattacharjee et al. (2006) RXLR</option>
11 <option value="Win2007">Win et al. (2007) RXLR</option> 16 <option value="Win2007">Win et al. (2007) RXLR</option>