Mercurial > repos > peterjc > tmhmm_and_signalp

diff tools/protein_analysis/rxlr_motifs.xml @ 9:e52220a9ddad draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.1.2 Use the new <stdio> settings in the XML wrappers to catch errors. Obeys SGE style XNSLOTS environment variable for thread count (otherwise default to 4).
author peterjc
date Fri, 25 Jan 2013 06:08:31 -0500
parents 9b45a8743100
children 7de64c8b258d
line wrap: on
line diff
--- a/tools/protein_analysis/rxlr_motifs.xml	Mon Jul 30 12:56:54 2012 -0400
+++ b/tools/protein_analysis/rxlr_motifs.xml	Fri Jan 25 06:08:31 2013 -0500
@@ -1,9 +1,14 @@
-<tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.5">
+<tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.6">
     <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description>
     <command interpreter="python">
       rxlr_motifs.py $fasta_file 8 $model $tabular_file
       ##I want the number of threads to be a Galaxy config option...
     </command>
+    <stdio>
+        <!-- Anything other than zero is an error -->
+        <exit_code range="1:" />
+        <exit_code range=":-1" />
+    </stdio>
     <inputs>
         <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences" /> 
         <param name="model" type="select" label="Which RXLR model?">