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comparison summarize_gff.xml @ 12:ddc6bab20889 draft

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author petr-novak
date Thu, 15 Aug 2019 07:20:12 -0400
parents d0431a839606
children e2bbc79f0fac
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11:1d5883a9ec3a 12:ddc6bab20889
1 <tool id="gff_summary" name="Summarize gff3 output from DANTE" version="0.1.0" python_template_version="3.5"> 1 <tool id="gff_summary" name="Summarize gff3 output from DANTE" version="0.1.0" python_template_version="3.5">
2 <requirements> 2 <requirements>
3 <requirement type="package">R</requirement> 3 <requirement type="package">R</requirement>
4 </requirements> 4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 5 <command detect_errors="exit_code"><![CDATA[
6 summarize_gff.R '$inputgff' '$output' 6 Rscript ${__tool_directory__}/summarize_gff.R '$inputgff' '$output' '$group'
7 ]]></command> 7 ]]></command>
8 <inputs> 8 <inputs>
9 <param type="data" name="inputgff" format="gff3" /> 9 <param type="data" name="inputgff" format="gff3" />
10 <param name="group" type="select" label="select categories to summarize" multiple="true"> 10 <param name="group" type="select" label="select categories to summarize" multiple="true" optional="false">
11 <option value="Name">Numerical sort</option> 11 <option value="Name">protein domain name</option>
12 <option value="Final_Classification">General numeric sort</option> 12 <option value="Final_Classification">Classification</option>
13 <option value="seqid">Alphabetical sort</option> 13 <option value="seqid">Sequence ID</option>
14 </param> 14 </param>
15 </inputs> 15 </inputs>
16 <outputs> 16 <outputs>
17 <data name="output" format="csv" /> 17 <data name="output" format="tabular" />
18 </outputs> 18 </outputs>
19 <help><![CDATA[ 19 <help><![CDATA[
20 TODO: Fill in help. 20 TODO: Fill in help.
21 ]]></help> 21 ]]></help>
22 </tool> 22 </tool>