Mercurial > repos > petr-novak > dante

comparison summarize_gff.xml @ 23:e2bbc79f0fac draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit baf4ca09569b1b709c37f2df712e778da05edaf9-dirty"
author petr-novak
date Wed, 25 Jan 2023 13:06:55 +0000
parents ddc6bab20889
children df99812ded92
comparison
equal deleted inserted replaced
22:1eabd42e00ef 23:e2bbc79f0fac
1 <tool id="gff_summary" name="Summarize gff3 output from DANTE" version="0.1.0" python_template_version="3.5"> 1 <tool id="gff_summary" name="Summarize gff3 output from DANTE" version="0.1.4" python_template_version="3.5">
2 <requirements> 2 <requirements>
3 <requirement type="package">R</requirement> 3 <requirement type="package">dante=0.1.4</requirement>
4 </requirements> 4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 5 <command detect_errors="exit_code"><![CDATA[
6 Rscript ${__tool_directory__}/summarize_gff.R '$inputgff' '$output' '$group' 6 summarize_gff.R '$inputgff' '$output' '$group'
7 ]]></command> 7 ]]></command>
8 <inputs> 8 <inputs>
9 <param type="data" name="inputgff" format="gff3" /> 9 <param type="data" name="inputgff" format="gff3" />
10 <param name="group" type="select" label="select categories to summarize" multiple="true" optional="false"> 10 <param name="group" type="select" label="select categories to summarize" multiple="false" optional="false">
11 <option value="Name">protein domain name</option> 11 <option value="Name">protein domain name</option>
12 <option value="Final_Classification">Classification</option> 12 <option value="Final_Classification">Classification</option>
13 <option value="seqid">Sequence ID</option> 13 <option value="seqid">Sequence ID</option>
14 </param> 14 </param>
15 </inputs> 15 </inputs>