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comparison dante_gff_to_dna.xml @ 9:ed4d9ede9cb4 draft

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Uploaded
author petr-novak
date Wed, 03 Jul 2019 09:21:52 -0400
parents 77d9f2ecb28a
children 039c45c01b47
comparison
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8:cc10173bd0c5 9:ed4d9ede9cb4
1 <tool id="domains_extract" name="Extract Domains Nucleotide Sequences" version="1.0.0"> 1 <tool id="domains_extract" name="Extract Domains Nucleotide Sequences" version="1.0.0">
2 <description> Tool to extract nucleotide sequences of protein domains found by DANTE </description> 2 <description> Tool to extract nucleotide sequences of protein domains found by DANTE </description>
3 <requirements>
4 <requirement type="package">biopython</requirement>
5 </requirements>
3 <command> 6 <command>
4 TEMP_DIR_LINEAGES=\$(mktemp -d) &amp;&amp; 7 TEMP_DIR_LINEAGES=\$(mktemp -d) &amp;&amp;
5 python3 ${__tool_directory__}/dante_gff_to_dna.py --domains_gff ${domains_gff} --input_dna ${input_dna} --out_dir \$TEMP_DIR_LINEAGES 8 python3 ${__tool_directory__}/dante_gff_to_dna.py --domains_gff ${domains_gff} --input_dna ${input_dna} --out_dir \$TEMP_DIR_LINEAGES
6 9
7 #if $extend_edges: 10 #if $extend_edges: