Mercurial > repos > petr-novak > dante

diff dante_gff_to_dna.xml @ 9:ed4d9ede9cb4 draft

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Uploaded
author petr-novak
date Wed, 03 Jul 2019 09:21:52 -0400
parents 77d9f2ecb28a
children 039c45c01b47
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--- a/dante_gff_to_dna.xml	Wed Jul 03 08:10:33 2019 -0400
+++ b/dante_gff_to_dna.xml	Wed Jul 03 09:21:52 2019 -0400
@@ -1,5 +1,8 @@
 <tool id="domains_extract" name="Extract Domains Nucleotide Sequences" version="1.0.0">
   <description> Tool to extract nucleotide sequences of protein domains found by DANTE </description>
+  <requirements>
+    <requirement type="package">biopython</requirement>
+  </requirements>
   <command>
     TEMP_DIR_LINEAGES=\$(mktemp -d) &amp;&amp;
     python3 ${__tool_directory__}/dante_gff_to_dna.py --domains_gff ${domains_gff} --input_dna ${input_dna} --out_dir \$TEMP_DIR_LINEAGES