Mercurial > repos > petr-novak > dante
changeset 16:0e820310d4dc draft
Uploaded
| author | petr-novak |
|---|---|
| date | Wed, 04 Sep 2019 06:45:18 -0400 |
| parents | 3151a72a6671 |
| children | 1a766f9f623d |
| files | coverage2gff.py parse_aln.py test-data/toolshed.g2.bx.psu.edu_repos_petr-novak_dante_dante_1.0.0.tgz |
| diffstat | 3 files changed, 2 insertions(+), 3 deletions(-) [+] |
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--- a/coverage2gff.py Tue Sep 03 05:20:02 2019 -0400 +++ b/coverage2gff.py Wed Sep 04 06:45:18 2019 -0400 @@ -36,7 +36,6 @@ d = {} for name, prof in zip(p, p): d[name[1:].strip()] = [int(i) for i in prof.split()] - print(d, file=sys.stderr) return d
--- a/parse_aln.py Tue Sep 03 05:20:02 2019 -0400 +++ b/parse_aln.py Wed Sep 04 06:45:18 2019 -0400 @@ -41,7 +41,7 @@ def get_header(f): - aln_header = ". : . : . : . : . : . :" + aln_header = " . : . : . : . : . : . :" contig_lead = "******************" aln_start = -1 while True: @@ -63,7 +63,7 @@ pos = f.tell() line = f.readline() # detect next contig or end of file - if "********" in line or line == "": + if "********" in line or line == "" or "Number of segment pairs = " in line: segment = False else: segment = True