Mercurial > repos > petr-novak > dante_ltr

comparison databases/lineage_domain_order.csv @ 7:c33d6583e548 draft

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"planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
author petr-novak
date Fri, 24 Jun 2022 14:19:48 +0000
parents 0c3111ab729b
children
comparison
equal deleted inserted replaced
6:b91ca438a1cb 7:c33d6583e548
1 Lineage Domains order offset5prime offset3prime 1 Lineage Domains order offset5prime offset3prime domain_span ltr_length
2 Class_I/LTR/Ty1_copia/Ale GAG PROT INT RT RH 2000 2000 2 Class_I/LTR/Ty1_copia/Ale GAG PROT INT RT RH 2000 2000 5000 123
3 Class_I/LTR/Ty1_copia/Alesia GAG PROT INT RT RH 2000 3000 3 Class_I/LTR/Ty1_copia/Alesia GAG PROT INT RT RH 2000 3000 5400 273
4 Class_I/LTR/Ty1_copia/Angela GAG PROT INT RT RH 4000 6000 4 Class_I/LTR/Ty1_copia/Angela GAG PROT INT RT RH 4000 6000 5400 1074
5 Class_I/LTR/Ty1_copia/Bianca GAG PROT INT RT RH 2000 3000 5 Class_I/LTR/Ty1_copia/Bianca GAG PROT INT RT RH 2000 3000 6000 132
6 Class_I/LTR/Ty1_copia/Bryco GAG PROT INT RT RH 2000 3000 6 Class_I/LTR/Ty1_copia/Bryco GAG PROT INT RT RH 2000 3000 5000 287
7 Class_I/LTR/Ty1_copia/Gymco-I GAG PROT INT RT RH 2000 2500 7 Class_I/LTR/Ty1_copia/Gymco-I GAG PROT INT RT RH 2000 2500 5400 151
8 Class_I/LTR/Ty1_copia/Gymco-II GAG PROT INT RT RH 4000 2000 8 Class_I/LTR/Ty1_copia/Gymco-II GAG PROT INT RT RH 4000 2000 4600 156
9 Class_I/LTR/Ty1_copia/Gymco-III GAG PROT INT RT RH 2000 2000 9 Class_I/LTR/Ty1_copia/Gymco-III GAG PROT INT RT RH 2000 2000 5400 247
10 Class_I/LTR/Ty1_copia/Gymco-IV GAG PROT INT RT RH 2000 2000 10 Class_I/LTR/Ty1_copia/Gymco-IV GAG PROT INT RT RH 2000 2000 5400 276
11 Class_I/LTR/Ty1_copia/Ikeros GAG PROT INT RT RH 2000 5000 11 Class_I/LTR/Ty1_copia/Ikeros GAG PROT INT RT RH 2000 5000 5400 359
12 Class_I/LTR/Ty1_copia/Ivana GAG PROT INT RT RH 2000 2000 12 Class_I/LTR/Ty1_copia/Ivana GAG PROT INT RT RH 2000 2000 5000 190
13 Class_I/LTR/Ty1_copia/Lyco GAG PROT INT RT RH 2000 2000 13 Class_I/LTR/Ty1_copia/Lyco GAG PROT INT RT RH 2000 2000 5500 119
14 Class_I/LTR/Ty1_copia/Osser GAG PROT INT RT RH 2000 2000 14 Class_I/LTR/Ty1_copia/Osser GAG PROT INT RT RH 2000 2000 5400 157
15 Class_I/LTR/Ty1_copia/SIRE GAG PROT INT RT RH 7000 4000 15 Class_I/LTR/Ty1_copia/SIRE GAG PROT INT RT RH 7000 4000 6000 522
16 Class_I/LTR/Ty1_copia/TAR GAG PROT INT RT RH 4000 3000 16 Class_I/LTR/Ty1_copia/TAR GAG PROT INT RT RH 4000 3000 5000 320
17 Class_I/LTR/Ty1_copia/Tork GAG PROT INT RT RH 2000 3000 17 Class_I/LTR/Ty1_copia/Tork GAG PROT INT RT RH 2000 3000 5000 277
18 Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir GAG PROT RT RH INT CHD 2000 4000 18 Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir GAG PROT RT RH INT CHD 2000 4000 7000 171
19 Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass GAG PROT RT RH INT CHD 5000 5000 19 Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass GAG PROT RT RH INT CHD 5000 5000 7000 104
20 Class_I/LTR/Ty3_gypsy/chromovirus/CRM GAG PROT RT RH INT CHDCR 6000 3000 20 Class_I/LTR/Ty3_gypsy/chromovirus/CRM GAG PROT RT RH INT CHDCR 6000 3000 6000 312
21 Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel GAG PROT RT RH INT CHD 3000 3000 21 Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel GAG PROT RT RH INT CHD 3000 3000 6000 405
22 Class_I/LTR/Ty3_gypsy/chromovirus/Reina GAG PROT RT RH INT CHD 2000 2000 22 Class_I/LTR/Ty3_gypsy/chromovirus/Reina GAG PROT RT RH INT CHD 2000 2000 5700 228
23 Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1 GAG PROT RT RH INT CHD 2000 2000 23 Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1 GAG PROT RT RH INT CHD 2000 2000 5400 387
24 Class_I/LTR/Ty3_gypsy/chromovirus/Tekay GAG PROT RT RH INT CHD 6000 6000 24 Class_I/LTR/Ty3_gypsy/chromovirus/Tekay GAG PROT RT RH INT CHD 6000 6000 6000 298
25 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila GAG PROT RT RH INT 3500 5000 25 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila GAG PROT RT RH INT 3500 5000 7000 281
26 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Ogre GAG PROT RT RH aRH INT 8000 12000 26 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Ogre GAG PROT RT RH aRH INT 8000 12000 10000 667
27 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand GAG PROT RT RH aRH INT 4000 12000 27 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand GAG PROT RT RH aRH INT 4000 12000 7000 419
28 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/TatI GAG PROT aRH RT RH INT 5000 5000 28 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/TatI GAG PROT aRH RT RH INT 5000 5000 7700 187
29 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/TatII GAG PROT aRH RT RH INT 5000 5000 29 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/TatII GAG PROT aRH RT RH INT 5000 5000 7400 149
30 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/TatIII GAG PROT RT RH INT aRH 10000 10000 30 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/TatIII GAG PROT RT RH INT aRH 10000 10000 7700 847
31 Class_I/LTR/Ty3_gypsy/non-chromovirus/Phygy GAG PROT RT RH INT 4000 4000 31 Class_I/LTR/Ty3_gypsy/non-chromovirus/Phygy GAG PROT RT RH INT 4000 4000 7400 1129
32 Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy GAG PROT RT RH INT 2000 2000 32 Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy GAG PROT RT RH INT 2000 2000 5600 163