Mercurial > repos > petr-novak > dante_ltr

annotate databases/lineage_domain_order.csv @ 7:c33d6583e548 draft

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"planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
author petr-novak
date Fri, 24 Jun 2022 14:19:48 +0000
parents 0c3111ab729b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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7
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
petr-novak
parents: 5
diff changeset
1 Lineage Domains order offset5prime offset3prime domain_span ltr_length
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
petr-novak
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2 Class_I/LTR/Ty1_copia/Ale GAG PROT INT RT RH 2000 2000 5000 123
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
petr-novak
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3 Class_I/LTR/Ty1_copia/Alesia GAG PROT INT RT RH 2000 3000 5400 273
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
petr-novak
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4 Class_I/LTR/Ty1_copia/Angela GAG PROT INT RT RH 4000 6000 5400 1074
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
petr-novak
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5 Class_I/LTR/Ty1_copia/Bianca GAG PROT INT RT RH 2000 3000 6000 132
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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6 Class_I/LTR/Ty1_copia/Bryco GAG PROT INT RT RH 2000 3000 5000 287
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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7 Class_I/LTR/Ty1_copia/Gymco-I GAG PROT INT RT RH 2000 2500 5400 151
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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8 Class_I/LTR/Ty1_copia/Gymco-II GAG PROT INT RT RH 4000 2000 4600 156
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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9 Class_I/LTR/Ty1_copia/Gymco-III GAG PROT INT RT RH 2000 2000 5400 247
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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10 Class_I/LTR/Ty1_copia/Gymco-IV GAG PROT INT RT RH 2000 2000 5400 276
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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11 Class_I/LTR/Ty1_copia/Ikeros GAG PROT INT RT RH 2000 5000 5400 359
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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12 Class_I/LTR/Ty1_copia/Ivana GAG PROT INT RT RH 2000 2000 5000 190
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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13 Class_I/LTR/Ty1_copia/Lyco GAG PROT INT RT RH 2000 2000 5500 119
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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14 Class_I/LTR/Ty1_copia/Osser GAG PROT INT RT RH 2000 2000 5400 157
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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15 Class_I/LTR/Ty1_copia/SIRE GAG PROT INT RT RH 7000 4000 6000 522
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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16 Class_I/LTR/Ty1_copia/TAR GAG PROT INT RT RH 4000 3000 5000 320
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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17 Class_I/LTR/Ty1_copia/Tork GAG PROT INT RT RH 2000 3000 5000 277
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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18 Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir GAG PROT RT RH INT CHD 2000 4000 7000 171
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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19 Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass GAG PROT RT RH INT CHD 5000 5000 7000 104
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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20 Class_I/LTR/Ty3_gypsy/chromovirus/CRM GAG PROT RT RH INT CHDCR 6000 3000 6000 312
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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21 Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel GAG PROT RT RH INT CHD 3000 3000 6000 405
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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22 Class_I/LTR/Ty3_gypsy/chromovirus/Reina GAG PROT RT RH INT CHD 2000 2000 5700 228
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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23 Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1 GAG PROT RT RH INT CHD 2000 2000 5400 387
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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24 Class_I/LTR/Ty3_gypsy/chromovirus/Tekay GAG PROT RT RH INT CHD 6000 6000 6000 298
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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25 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila GAG PROT RT RH INT 3500 5000 7000 281
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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26 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Ogre GAG PROT RT RH aRH INT 8000 12000 10000 667
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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27 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand GAG PROT RT RH aRH INT 4000 12000 7000 419
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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28 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/TatI GAG PROT aRH RT RH INT 5000 5000 7700 187
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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29 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/TatII GAG PROT aRH RT RH INT 5000 5000 7400 149
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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parents: 5
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30 Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/TatIII GAG PROT RT RH INT aRH 10000 10000 7700 847
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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31 Class_I/LTR/Ty3_gypsy/non-chromovirus/Phygy GAG PROT RT RH INT 4000 4000 7400 1129
c33d6583e548 "planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
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32 Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy GAG PROT RT RH INT 2000 2000 5600 163