<tool id="dante_ltr_summary" name="Summarize DANTE_LTR output" version="@TOOL_VERSION@" python_template_version="3.5">
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[
        dante_ltr_summary -g '$input1' -o output &&
         ls -l &&
        cp output.html $output1 &&
        mkdir -p ${output1.extra_files_path} &&
        cp -r output_plots ${output1.extra_files_path}/
    ]]></command>
    <inputs>
        <param type="data" name="input1" format="gff3" label="GFF3 output from DANTE_LTR" />
    </inputs>
    <outputs>
        <data label="DANTE_LTR summmary from dataset $input1.hid" format="html" name="output1" />
    </outputs>
    <help><![CDATA[
        This tool takes GFF3 output from DANTE_LTR and make graphical summary of the results.
    ]]></help>
</tool>