Mercurial > repos > petr-novak > re_utils
diff test_run1.sh @ 5:378565f5a875 draft
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author | petr-novak |
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date | Fri, 22 Nov 2019 07:56:48 -0500 |
parents | a4cd8608ef6b |
children |
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--- a/test_run1.sh Wed Sep 18 06:30:04 2019 -0400 +++ b/test_run1.sh Fri Nov 22 07:56:48 2019 -0500 @@ -9,7 +9,17 @@ ./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test1.fasta -G tmp/test1.png -c 10 -N 0 echo "single fastq filtering with with sampling" -./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.fasta -G tmp/test2.png -c 10 -N 0 -n 500 +./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2a.fasta -G tmp/test2a.png -c 10 -N 0 -n 500 + +echo "single fastq filtering with with sampling" +./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2b.fasta -G tmp/test2b.png -c 10 -N 0 -n 647 + +echo "single fastq filtering with with sampling" +./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2c.fasta -G tmp/test2c.png -c 10 -N 0 -n 839 + +echo "single fastq filtering with with sampling" +./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2d.fasta -G tmp/test2d.png -c 10 -N 0 -n 911 + echo "single fastq filtering with contaminant removing" ./single_fastq_filtering_wrapper.sh -F tool_data/organele_ref_and_phi-X174.fasta -a test_data/ERR215189_1_part.fastq.gz -o tmp/test3.fasta -G tmp/test3.png -c 10 -N 0