Mercurial > repos > petr-novak > re_utils
diff test_run2.sh @ 5:378565f5a875 draft
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author | petr-novak |
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date | Fri, 22 Nov 2019 07:56:48 -0500 |
parents | a4cd8608ef6b |
children |
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--- a/test_run2.sh Wed Sep 18 06:30:04 2019 -0400 +++ b/test_run2.sh Fri Nov 22 07:56:48 2019 -0500 @@ -6,7 +6,16 @@ ./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.1.fasta -G tmp/test2.1.png -c 10 -N 0 echo "paired fastq filtering with with sampling" -./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.2.fasta -G tmp/test2.2.png -c 10 -N 0 -n 500 +./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.a2.fasta -G tmp/test2.2.png -c 10 -N 0 -n 500 + +echo "paired fastq filtering with with sampling" +./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.a3.fasta -G tmp/test2.2.png -c 10 -N 0 -n 653 + +echo "paired fastq filtering with with sampling" +./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.a4.fasta -G tmp/test2.2.png -c 10 -N 0 -n 547 + +echo "paired fastq filtering with with sampling" +./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.a5.fasta -G tmp/test2.2.png -c 10 -N 0 -n 839 echo "paired fastq filtering with contaminant removing" ./paired_fastq_filtering_wrapper.sh -F tool_data/organele_ref_and_phi-X174.fasta -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.3.fasta -G tmp/test2.3.png -c 10 -N 0