Mercurial > repos > petr-novak > re_utils

changeset 25:5dba804e6884 draft

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planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty
author petr-novak
date Wed, 02 Aug 2023 12:42:08 +0000
parents b50db133106a
children 93595f42a04d
files extract_contigs_from_archive.xml
diffstat 1 files changed, 1 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/extract_contigs_from_archive.xml	Wed Aug 02 12:28:39 2023 +0000
+++ b/extract_contigs_from_archive.xml	Wed Aug 02 12:42:08 2023 +0000
@@ -3,6 +3,7 @@
      <![CDATA[
     unzip -p ${RepeatExplorer_archive} contigs.fasta  > ${contigs}
     &&
+    mkdir -p tempdir
     unzip ${RepeatExplorer_archive} "*.aln" -d tempdir
     &&
     find tempdir -type f -name "*.aln" -exec cat {} + > ${aln}