Mercurial > repos > petr-novak > re_utils

changeset 28:ba970b24e48c draft

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planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty
author petr-novak
date Wed, 02 Aug 2023 13:09:47 +0000
parents eefed7a82001
children 53dc6aef5441
files extract_files_from_re_archive.xml
diffstat 1 files changed, 9 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/extract_files_from_re_archive.xml	Wed Aug 02 12:59:29 2023 +0000
+++ b/extract_files_from_re_archive.xml	Wed Aug 02 13:09:47 2023 +0000
@@ -8,24 +8,33 @@
     #for $sf in $file:
     #if $sf == "CLUSTER_TABLE.csv"
     mkdir -p tempdir
+    &&
     unzip ${RepeatExplorer_archive} ${sf} -d tempdir
+    &&
     find tempdir -type f -name "${sf}" -exec cat {} + > ${cluster_table}
+    &&
     rm -r tempdir
     ;
     #end if
 
     #if $sf == "COMPARATIVE_ANALYSIS_COUNTS.csv"
     mkdir -p tempdir
+    &&
     unzip ${RepeatExplorer_archive} ${sf} -d tempdir
+    &&
     find tempdir -type f -name "${sf}" -exec cat {} + > ${comparative_analysis_count}
+    &&
     rm -r tempdir
     ;
     #end if
 
     #if $sf == "SUPERCLUSTER_TABLE.csv"
     mkdir -p tempdir
+    &&
     unzip ${RepeatExplorer_archive} ${sf} -d tempdir
+    &&
     find tempdir -type f -name "${sf}" -exec cat {} + > ${supercluster_table}
+    &&
     rm -r tempdir
     #end if