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1 #!/bin/bash
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2
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3 CC=g++
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4 CFLAGS= -ansi -O5 -Wall
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5 LDFLAGS= -ansi -lm -Wall
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6 EXEC=bin/louvain_community bin/louvain_convert bin/louvain_hierarchy
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7 OBJ1= louvain/graph_binary.o louvain/community.o
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8 OBJ2= louvain/graph.o
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9
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10 DNA_DB=databases/dna_database_masked.fasta.nhr
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11 PROT_DB=re_databases/protein_database_viridiplantae_v3.0.fasta.phr
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12 TRNA_DB=databases/tRNA_database.fasta.nhr
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13
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14
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15 all: $(EXEC) $(DNA_DB) $(PROT_DB) $(TRNA_DB)
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16
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17 bin/louvain_community : $(OBJ1) louvain/main_community.o
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18 $(CC) -o $@ $^ $(LDFLAGS)
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19
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20 bin/louvain_convert : $(OBJ2) louvain/main_convert.o
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21 $(CC) -o $@ $^ $(LDFLAGS)
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22
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23 bin/louvain_hierarchy : louvain/main_hierarchy.o
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24 $(CC) -o $@ $^ $(LDFLAGS)
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25
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26 $(DNA_DB) : databases/dna_database_masked.fasta
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27 makeblastdb -in databases/dna_database_masked.fasta -out databases/dna_database_masked.fasta -dbtype nucl
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28
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29 $(TRNA_DB) : databases/tRNA_database.fasta
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30 makeblastdb -in databases/tRNA_database.fasta -out databases/tRNA_database.fasta -dbtype nucl
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31
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32 $(PROT_DB) : config.py
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33 ./fetch_databases.sh
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34
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35 dna_database: $(DFASTA)
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36 ##########################################
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37 # Generic rules
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38 ##########################################
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39
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40 %.o: %.cpp %.h
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41 $(CC) -o $@ -c $< $(CFLAGS)
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42
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43 %.o: %.cpp
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44 $(CC) -o $@ -c $< $(CFLAGS)
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45
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46 clean:
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47 rm -f *.o *~ $(EXEC)
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