Mercurial > repos > petr-novak > repeatrxplorer
comparison HOW_TO_CITE.html @ 0:1d1b9e1b2e2f draft
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| author | petr-novak |
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| date | Thu, 19 Dec 2019 10:24:45 -0500 |
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| 1 <hr> | |
| 2 | |
| 3 <h3> How to cite </h3> | |
| 4 <p> | |
| 5 Novak, P., Neumann, P., Pech, J., Steinhaisl, J., Macas, J. (2013) - | |
| 6 <a href="http://bioinformatics.oxfordjournals.org/content/29/6/792">RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next generation sequence reads.</a> <i> Bioinformatics</i> <b>29</b>:792-793. | |
| 7 </p> | |
| 8 | |
| 9 <p><i> Classification of repetitive elements using REXdb:</i></p> | |
| 10 <p>Neumann, P., Novak, P., Hostakova, N., Macas, J. (2019) – <a href="https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-018-0144-1" target="_blank">Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification</a>. <em>Mobile DNA</em> <b>10</b>:1.</p> | |
| 11 | |
| 12 </p> | |
| 13 <i>The principle of repeat identification implemented in the RepeatExplorer:</i> | |
| 14 <p> | |
| 15 Novak, P., Neumann, P., Macas, J. (2010) - <a href="http://www.biomedcentral.com/1471-2105/11/378">Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.</a> <i>BMC Bioinformatics</i> <b>11</b>:378. | |
| 16 </p> | |
| 17 <i>Using TAREAN for satellite repeat detection and characterization:</i> | |
| 18 <p> | |
| 19 Novak, P., Robledillo, L.A.,Koblizkova, A., Vrbova, I., Neumann, P., Macas, J. (2017) - | |
| 20 <a href="https://doi.org/10.1093/nar/gkx257"> TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.</a> <i> Nucleic Acid Research </i> <b>45</b>:e111 | |
| 21 </p> |