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<h3> How to cite </h3>
<p>
	Novak, P., Neumann, P., Pech, J., Steinhaisl, J., Macas, J. (2013) -
	  <a href="http://bioinformatics.oxfordjournals.org/content/29/6/792">RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next generation sequence reads.</a> <i> Bioinformatics</i> <b>29</b>:792-793.
</p>

<p><i> Classification of repetitive elements using REXdb:</i></p>
<p>Neumann, P., Novak, P., Hostakova, N., Macas, J. (2019) &#8211; <a href="https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-018-0144-1" target="_blank">Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification</a>. <em>Mobile DNA</em> <b>10</b>:1.</p>

</p>
<i>The principle of repeat identification implemented in the RepeatExplorer:</i>
<p>
	  Novak, P., Neumann, P., Macas, J. (2010) - <a href="http://www.biomedcentral.com/1471-2105/11/378">Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.</a> <i>BMC Bioinformatics</i> <b>11</b>:378.
</p>
<i>Using TAREAN for satellite repeat detection and characterization:</i>
<p>
  Novak, P., Robledillo, L.A.,Koblizkova, A., Vrbova, I., Neumann, P., Macas, J. (2017) -
    <a href="https://doi.org/10.1093/nar/gkx257"> TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.</a> <i> Nucleic Acid Research </i> <b>45</b>:e111
</p>