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comparison repex_tarean.xml @ 11:3b1ebd937035 draft

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Uploaded
author petr-novak
date Wed, 08 Jan 2020 03:36:40 -0500
parents c884df88593f
children d08801a298ad
comparison
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10:7d88d9fabe99 11:3b1ebd937035
26 <requirement type="package">r-optparse</requirement> 26 <requirement type="package">r-optparse</requirement>
27 <requirement type="package">r-dbi</requirement> 27 <requirement type="package">r-dbi</requirement>
28 <requirement type="package">r-rsqlite</requirement> 28 <requirement type="package">r-rsqlite</requirement>
29 <requirement type="package">r-rserve</requirement> 29 <requirement type="package">r-rserve</requirement>
30 <requirement type="package">bioconductor-biostrings</requirement> 30 <requirement type="package">bioconductor-biostrings</requirement>
31 <requirement type="package" version="1.0">repex_tarean</requirement> 31 <requirement type="package" version="2.3.6">repex_tarean</requirement>
32 <requirement type="set_environment">REPEX</requirement> 32 <requirement type="set_environment">REPEX</requirement>
33 <requirement type="set_environment">REPEX_VERSION</requirement>
33 <requirement type="package" version="0.9.1">pyrserve</requirement> 34 <requirement type="package" version="0.9.1">pyrserve</requirement>
34 </requirements> 35 </requirements>
35 <command detect_errors="exit_code"> 36 <command detect_errors="exit_code">
36 export PYTHONHASHSEED=0; 37 export PYTHONHASHSEED=0;
37 \${REPEX}/seqclust --paired --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup --tarean_mode 38 \${REPEX}/seqclust --paired --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup --tarean_mode