Mercurial > repos > petr-novak > repeatrxplorer

changeset 11:3b1ebd937035 draft

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Uploaded
author petr-novak
date Wed, 08 Jan 2020 03:36:40 -0500
parents 7d88d9fabe99
children d08801a298ad
files repex_full_clustering.xml repex_tarean.xml tool_dependencies.xml
diffstat 3 files changed, 6 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/repex_full_clustering.xml	Mon Jan 06 10:06:22 2020 -0500
+++ b/repex_full_clustering.xml	Wed Jan 08 03:36:40 2020 -0500
@@ -30,8 +30,9 @@
      <requirement type="package">r-rsqlite</requirement>
      <requirement type="package">r-rserve</requirement>
      <requirement type="package">bioconductor-biostrings</requirement>
-     <requirement type="package" version="1.0">repex_tarean</requirement>
+     <requirement type="package" version="2.3.6">repex_tarean</requirement>
      <requirement type="set_environment">REPEX</requirement>
+     <requirement type="set_environment">REPEX_VERSION</requirement>
      <requirement type="package" version="0.9.1" >pyrserve</requirement>
    </requirements>
     <command >
--- a/repex_tarean.xml	Mon Jan 06 10:06:22 2020 -0500
+++ b/repex_tarean.xml	Wed Jan 08 03:36:40 2020 -0500
@@ -28,8 +28,9 @@
       <requirement type="package">r-rsqlite</requirement>
       <requirement type="package">r-rserve</requirement>
       <requirement type="package">bioconductor-biostrings</requirement>
-      <requirement type="package" version="1.0">repex_tarean</requirement>
+      <requirement type="package" version="2.3.6">repex_tarean</requirement>
       <requirement type="set_environment">REPEX</requirement>
+      <requirement type="set_environment">REPEX_VERSION</requirement>
       <requirement type="package" version="0.9.1">pyrserve</requirement>
     </requirements>
   <command detect_errors="exit_code">
--- a/tool_dependencies.xml	Mon Jan 06 10:06:22 2020 -0500
+++ b/tool_dependencies.xml	Wed Jan 08 03:36:40 2020 -0500
@@ -1,7 +1,7 @@
 <?xml version="1.0" ?>
 <tool_dependency>
-    <package name="repex_tarean" version="1.0">
-        <repository changeset_revision="ee8fa2353d9c" name="package_repex_tarean_1_0" owner="petr-novak" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <package name="repex_tarean" version="2.3.6">
+        <repository changeset_revision="dfda5209f071" name="package_repex_tarean_1_0" owner="petr-novak" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"/>
         <readme>
       prepare repex database and scripts
     </readme>