Mercurial > repos > petr-novak > repeatrxplorer

changeset 12:d08801a298ad draft

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Uploaded
author petr-novak
date Wed, 08 Jan 2020 06:03:33 -0500
parents 3b1ebd937035
children 789a5e76c77c
files repex_full_clustering.xml repex_tarean.xml tool_dependencies.xml
diffstat 3 files changed, 10 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/repex_full_clustering.xml	Wed Jan 08 03:36:40 2020 -0500
+++ b/repex_full_clustering.xml	Wed Jan 08 06:03:33 2020 -0500
@@ -1,4 +1,4 @@
-<tool id="repeatexplorer2x" name="RepeatExplorer2 clustering: " version="2.3.6" >
+<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.7" >
     <stdio>
       <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
       <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
@@ -30,7 +30,7 @@
      <requirement type="package">r-rsqlite</requirement>
      <requirement type="package">r-rserve</requirement>
      <requirement type="package">bioconductor-biostrings</requirement>
-     <requirement type="package" version="2.3.6">repex_tarean</requirement>
+     <requirement type="package" version="2.3.7">repex_tarean</requirement>
      <requirement type="set_environment">REPEX</requirement>
      <requirement type="set_environment">REPEX_VERSION</requirement>
      <requirement type="package" version="0.9.1" >pyrserve</requirement>
@@ -142,6 +142,8 @@
     </when>
   </conditional>
 
+  
+
  </inputs>
     <outputs>
 	<data name="log" format="txt" label="RepeatExplorer2 - log file"/> 
--- a/repex_tarean.xml	Wed Jan 08 03:36:40 2020 -0500
+++ b/repex_tarean.xml	Wed Jan 08 06:03:33 2020 -0500
@@ -1,4 +1,4 @@
-<tool id="tareanx" name="Tandem Repeat Analyzer"  version="2.3.6" >
+<tool id="tarean" name="Tandem Repeat Analyzer"  version="2.3.7" >
     <stdio>
       <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
       <regex match="error" source="stderr" level="fatal" description="Unknown error" />
@@ -28,7 +28,7 @@
       <requirement type="package">r-rsqlite</requirement>
       <requirement type="package">r-rserve</requirement>
       <requirement type="package">bioconductor-biostrings</requirement>
-      <requirement type="package" version="2.3.6">repex_tarean</requirement>
+      <requirement type="package" version="2.3.7">repex_tarean</requirement>
       <requirement type="set_environment">REPEX</requirement>
       <requirement type="set_environment">REPEX_VERSION</requirement>
       <requirement type="package" version="0.9.1">pyrserve</requirement>
@@ -106,6 +106,8 @@
       </when>
     </conditional>
 
+    
+
   </inputs>
   <outputs>
 	  <data name="log" format="txt" label="TAREAN log file"/> 
--- a/tool_dependencies.xml	Wed Jan 08 03:36:40 2020 -0500
+++ b/tool_dependencies.xml	Wed Jan 08 06:03:33 2020 -0500
@@ -1,7 +1,7 @@
 <?xml version="1.0" ?>
 <tool_dependency>
-    <package name="repex_tarean" version="2.3.6">
-        <repository changeset_revision="dfda5209f071" name="package_repex_tarean_1_0" owner="petr-novak" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <package name="repex_tarean" version="2.3.7">
+        <repository changeset_revision="b32c746fa556" name="package_repex_tarean_1_0" owner="petr-novak" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"/>
         <readme>
       prepare repex database and scripts
     </readme>