Mercurial > repos > petr-novak > repeatrxplorer

comparison repex_tarean.xml @ 12:d08801a298ad draft

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Uploaded
author petr-novak
date Wed, 08 Jan 2020 06:03:33 -0500
parents 3b1ebd937035
children
comparison
equal deleted inserted replaced
11:3b1ebd937035 12:d08801a298ad
1 <tool id="tareanx" name="Tandem Repeat Analyzer" version="2.3.6" > 1 <tool id="tarean" name="Tandem Repeat Analyzer" version="2.3.7" >
2 <stdio> 2 <stdio>
3 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> 3 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
4 <regex match="error" source="stderr" level="fatal" description="Unknown error" /> 4 <regex match="error" source="stderr" level="fatal" description="Unknown error" />
5 <regex match="warning" source="stderr" level="warning" description="Unknown warning" /> 5 <regex match="warning" source="stderr" level="warning" description="Unknown warning" />
6 <exit_code range="1:" level="fatal" description="Error" /> 6 <exit_code range="1:" level="fatal" description="Error" />
26 <requirement type="package">r-optparse</requirement> 26 <requirement type="package">r-optparse</requirement>
27 <requirement type="package">r-dbi</requirement> 27 <requirement type="package">r-dbi</requirement>
28 <requirement type="package">r-rsqlite</requirement> 28 <requirement type="package">r-rsqlite</requirement>
29 <requirement type="package">r-rserve</requirement> 29 <requirement type="package">r-rserve</requirement>
30 <requirement type="package">bioconductor-biostrings</requirement> 30 <requirement type="package">bioconductor-biostrings</requirement>
31 <requirement type="package" version="2.3.6">repex_tarean</requirement> 31 <requirement type="package" version="2.3.7">repex_tarean</requirement>
32 <requirement type="set_environment">REPEX</requirement> 32 <requirement type="set_environment">REPEX</requirement>
33 <requirement type="set_environment">REPEX_VERSION</requirement> 33 <requirement type="set_environment">REPEX_VERSION</requirement>
34 <requirement type="package" version="0.9.1">pyrserve</requirement> 34 <requirement type="package" version="0.9.1">pyrserve</requirement>
35 </requirements> 35 </requirements>
36 <command detect_errors="exit_code"> 36 <command detect_errors="exit_code">
104 </param> 104 </param>
105 </conditional> 105 </conditional>
106 </when> 106 </when>
107 </conditional> 107 </conditional>
108 108
109
110
109 </inputs> 111 </inputs>
110 <outputs> 112 <outputs>
111 <data name="log" format="txt" label="TAREAN log file"/> 113 <data name="log" format="txt" label="TAREAN log file"/>
112 <data name="ReportArchive" format="zip" label="TAREAN Archive with HTML report from data ${FastaFile.hid}"/> 114 <data name="ReportArchive" format="zip" label="TAREAN Archive with HTML report from data ${FastaFile.hid}"/>
113 <data name="ReportFile" format="html" label="TAREAN HTML report from data ${FastaFile.hid}"/> 115 <data name="ReportFile" format="html" label="TAREAN HTML report from data ${FastaFile.hid}"/>