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view gff2tabular.xml @ 2:90c46e40d222 draft

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planemo upload for repository https://github.com/kavonrtep/galaxy_packages commit 248ffeb6792d5807820b664eae3e88306f3f395e-dirty
author petr-novak
date Mon, 26 Feb 2024 13:11:53 +0000
parents 696e702ebf74
children
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<tool id="gff2tabular" name="GFF to Tabular" version="0.1.0">
    <description>converter</description>
    <requirements>
        <requirement type="package">R</requirement>
        <requirement type="package">bioconductor-rtracklayer</requirement>
    </requirements>
    <required_files>
        <include type="literal" path="gff2tabular.R"/>
    </required_files>
    <command detect_errors="exit_code"><![CDATA[
        Rscript ${__tool_directory__}/gff2tabular.R '$inputgff' '$output'
    ]]></command>
    <inputs>
      <param type="data" name="inputgff" format="gff" />
    </inputs>
    <outputs>
        <data name="output" format="tabular" />
    </outputs>
    <help><![CDATA[
        Convert gff2/gff3 to tab delimited file
    ]]></help>
</tool>