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comparison NGSrich_0.5.5/src/dataGenerators/ReadAlginmentDataGenerator.java @ 0:89ad0a9cca52 default tip

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author pfrommolt
date Mon, 21 Nov 2011 08:12:19 -0500
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1 package dataGenerators;
2
3 import java.util.Random;
4
5 public class ReadAlginmentDataGenerator {
6
7 String[] chrs = {"chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12",
8 "chr13","chr14", "chr15","chr16","chr17","chr18","chr19","chr20","chr21","chrX","chrY"};
9
10 String qname = "dummy";
11 String flag = "0";
12 String chr;
13 int start;
14 String mapq = "0";
15 String cigar = "dummy";
16 String mrnm = "*";
17 String mpos = "0";
18 String isize = "0";
19 String seq = "CAACCCTAACCCTAACCCAAACCCCAACCCTAACCCTACCCCTACCCCAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC";
20 String qua = "#################################################FCCGGGFGGD=GDDIHIGHIJIGHGDJJIHGIHHHGFIHHBHFFFFFFBCB";
21 String tvv = "dummy";
22
23 public String generateReadLine(int pos, int length){
24 Random r = new Random();
25 return null;
26
27
28 }
29
30 }