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1 package dataGenerators;
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2
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3 import java.util.Random;
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4
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5 public class ReadAlginmentDataGenerator {
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6
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7 String[] chrs = {"chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12",
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8 "chr13","chr14", "chr15","chr16","chr17","chr18","chr19","chr20","chr21","chrX","chrY"};
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9
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10 String qname = "dummy";
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11 String flag = "0";
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12 String chr;
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13 int start;
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14 String mapq = "0";
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15 String cigar = "dummy";
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16 String mrnm = "*";
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17 String mpos = "0";
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18 String isize = "0";
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19 String seq = "CAACCCTAACCCTAACCCAAACCCCAACCCTAACCCTACCCCTACCCCAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC";
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20 String qua = "#################################################FCCGGGFGGD=GDDIHIGHIJIGHGDJJIHGIHHHGFIHHBHFFFFFFBCB";
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21 String tvv = "dummy";
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22
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23 public String generateReadLine(int pos, int length){
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24 Random r = new Random();
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25 return null;
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26
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27
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28 }
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29
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30 }
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