diff NGSrich_0.5.5/src/dataGenerators/ReadAlginmentDataGenerator.java @ 0:89ad0a9cca52 default tip

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author pfrommolt
date Mon, 21 Nov 2011 08:12:19 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/NGSrich_0.5.5/src/dataGenerators/ReadAlginmentDataGenerator.java	Mon Nov 21 08:12:19 2011 -0500
@@ -0,0 +1,30 @@
+package dataGenerators;
+
+import java.util.Random;
+
+public class ReadAlginmentDataGenerator {
+	
+	String[] chrs = {"chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12",
+					 "chr13","chr14", "chr15","chr16","chr17","chr18","chr19","chr20","chr21","chrX","chrY"};
+	
+	String qname = "dummy";
+	String flag = "0";
+	String chr;
+	int start;
+	String mapq = "0";
+	String cigar = "dummy";
+	String mrnm = "*";
+	String mpos = "0";
+	String isize = "0";
+	String seq = "CAACCCTAACCCTAACCCAAACCCCAACCCTAACCCTACCCCTACCCCAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC";
+	String qua = "#################################################FCCGGGFGGD=GDDIHIGHIJIGHGDJJIHGIHHHGFIHHBHFFFFFFBCB";
+	String tvv = "dummy";
+	
+	public String generateReadLine(int pos, int length){
+		Random r = new Random();
+		return null;
+		
+		
+	}
+	
+}