Mercurial > repos > pfrommolt > ngsrich
diff NGSrich_0.5.5/src/dataGenerators/ReadAlginmentDataGenerator.java @ 0:89ad0a9cca52 default tip
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author | pfrommolt |
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date | Mon, 21 Nov 2011 08:12:19 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/NGSrich_0.5.5/src/dataGenerators/ReadAlginmentDataGenerator.java Mon Nov 21 08:12:19 2011 -0500 @@ -0,0 +1,30 @@ +package dataGenerators; + +import java.util.Random; + +public class ReadAlginmentDataGenerator { + + String[] chrs = {"chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12", + "chr13","chr14", "chr15","chr16","chr17","chr18","chr19","chr20","chr21","chrX","chrY"}; + + String qname = "dummy"; + String flag = "0"; + String chr; + int start; + String mapq = "0"; + String cigar = "dummy"; + String mrnm = "*"; + String mpos = "0"; + String isize = "0"; + String seq = "CAACCCTAACCCTAACCCAAACCCCAACCCTAACCCTACCCCTACCCCAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC"; + String qua = "#################################################FCCGGGFGGD=GDDIHIGHIJIGHGDJJIHGIHHHGFIHHBHFFFFFFBCB"; + String tvv = "dummy"; + + public String generateReadLine(int pos, int length){ + Random r = new Random(); + return null; + + + } + +}