Mercurial > repos > pfrommolt > ngsrich
view NGSrich_0.5.5/src/dataGenerators/ReadAlginmentDataGenerator.java @ 0:89ad0a9cca52 default tip
Uploaded
author | pfrommolt |
---|---|
date | Mon, 21 Nov 2011 08:12:19 -0500 |
parents | |
children |
line wrap: on
line source
package dataGenerators; import java.util.Random; public class ReadAlginmentDataGenerator { String[] chrs = {"chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12", "chr13","chr14", "chr15","chr16","chr17","chr18","chr19","chr20","chr21","chrX","chrY"}; String qname = "dummy"; String flag = "0"; String chr; int start; String mapq = "0"; String cigar = "dummy"; String mrnm = "*"; String mpos = "0"; String isize = "0"; String seq = "CAACCCTAACCCTAACCCAAACCCCAACCCTAACCCTACCCCTACCCCAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC"; String qua = "#################################################FCCGGGFGGD=GDDIHIGHIJIGHGDJJIHGIHHHGFIHHBHFFFFFFBCB"; String tvv = "dummy"; public String generateReadLine(int pos, int length){ Random r = new Random(); return null; } }