Mercurial > repos > pieterlukasse > prims_masscomb
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author | pieter.lukasse@wur.nl |
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date | Wed, 08 Jan 2014 11:34:51 +0100 |
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children | f47b24cccf88 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Wed Jan 08 11:34:51 2014 +0100 @@ -0,0 +1,70 @@ +PRIMS-masscomb toolset & Galaxy wrappers +======================================== + +MASSCOMB module of Plant Research International's Mass Spectrometry (PRIMS) toolsuite. + +This toolset consists of tools that enable combining popular external mass spectrometry +data processing tools (like X!Tandem and ProteoWizard's MsPicture) +into your own Galaxy workflows. + +Can be used a.o. in combination with PRIMV-visualization (primv_visualization package) and +PRIMS-proteomics (prims_proteomics package). + +Copyright 2010-2013 by Pieter Lukasse, Plant Research International (PRI), +Wageningen, The Netherlands. All rights reserved. See the license text in LICENSE file. + +Galaxy wrappers and installation are available from the Galaxy Tool Shed at: +http://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_masscomb + + +History +======= + +============== ======================================================================== +Date Changes +-------------- ------------------------------------------------------------------------ +January 2014 * first release via Tool Shed +November 2013 * tools used internally at PRI +... ... +December 2011 * added wrapper for X!Tandem and tool for converting output to MzIdentML +============== ======================================================================== + +Tool Versioning +=============== + +Tools will have versions of the form X.Y.Z. Versions +differing only after the second decimal should be completely +compatible with each other. Breaking changes should result in an +increment of the number before and/or after the first decimal. All +tools of version less than 1.0.0 should be considered beta. + + +Bug Reports & other questions +============================= + +For the time being issues can be reported via the contact form at +http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm + +Developers, Contributions & Collaborations +========================================== + +If you wish to join forces and collaborate on some of the +tools do not hesitate to contact Pieter Lukasse via the contact form above. + +License (Apache, Version 2.0) +============================= + +Copyright 2013 Pieter Lukasse, Plant Research International (PRI). + +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this software except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + \ No newline at end of file