Mercurial > repos > pieterlukasse > prims_metabolomics

annotate rankfilter_text2tabular.xml @ 57:963684611ccb

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fix for xcms support in msclust
author pieter.lukasse@wur.nl
date Fri, 12 Dec 2014 12:06:36 +0100
parents 9d5f4f5f764b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
1 <tool id="NDIStext2tabular" name="NIST_UTIL- NIST text to tabular format" version="1.0.2">
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
2 <description>Convert NIST text to tabular format</description>
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
3 <command interpreter="python">rankfilter_GCMS/pdftotabular.py $input $output $output_err</command>
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
4 <inputs>
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
5 <param format="pdf" name="input" type="data" label="NIST identifications report (PDF)"/>
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
6 </inputs>
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
7 <outputs>
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
8 <data format="tabular" label="${tool.name} output on ${on_string}" name="output" />
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
9 <data format="tabular" label="${tool.name} error log" name="output_err" />
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
10 </outputs>
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
11 <help>
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
12 This tool converts NIST identification report output (PDF) to a tabular format needed for further use with the RIQC tools.
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
13 </help>
9d5f4f5f764b Initial commit to toolshed
pieter.lukasse@wur.nl
parents:
diff changeset
14 </tool>