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comparison library_lookup.xml @ 41:e67149fbff20

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small changes/improvements; new metams and xcms tools
author pieter.lukasse@wur.nl
date Thu, 06 Nov 2014 16:14:44 +0100
parents 9d5f4f5f764b
children
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40:a7b609941846 41:e67149fbff20
11 ${ctype.columntype} 11 ${ctype.columntype}
12 #end for 12 #end for
13 $regression.model 13 $regression.model
14 </command> 14 </command>
15 <inputs> 15 <inputs>
16 <!-- Regarding the <page> items: this blocks the use of this tool in Galaxy workflows. However,
17 alternatives like wrapping this in conditionals, repeats (to force a refresh_on_change as this option
18 is not working on its own) failed since the workflow editor does not support refreshes...not does the
19 workflow runtime support conditionals or repeats to be set at runtime. See also
20 galaxy-dev mail thread "when else" in <conditional> ? RE: refresh_on_change : is this a valid attribute? Any other ideas/options??" -->
16 <page> 21 <page>
17 <param format="tabular" name="input" type="data" label="NIST identifications as tabular file" 22 <param format="tabular" name="input" type="data" label="NIST identifications as tabular file"
18 help="Select a tab delimited NIST metabolite identifications file (converted from PDF)" /> 23 help="Select a tab delimited NIST metabolite identifications file (converted from PDF)" />
19 <param name="library_file" type="select" label="CAS x RI Library file" 24 <param name="library_file" type="select" label="CAS x RI Library file"
20 help="Select a library/lookup file containing RI values for CAS numbers on various chromatography columns " 25 help="Select a library/lookup file containing RI values for CAS numbers on various chromatography columns "
21 dynamic_options='get_directory_files("tool-data/shared/PRIMS-metabolomics/RI_DB_libraries")'/> 26 dynamic_options='get_directory_files("tool-data/shared/PRIMS-metabolomics/RI_DB_libraries")'/>
27 </page>
28 <page>
22 <param name="col_type" type="select" label="Select column type" refresh_on_change="true" 29 <param name="col_type" type="select" label="Select column type" refresh_on_change="true"
23 display="radio" dynamic_options='get_column_type(library_file)' 30 display="radio" dynamic_options='get_column_type(library_file)'
24 help="" /> 31 help="" />
25 </page> 32 </page>
26 <page> 33 <page>
27 <param name="polarity" type="select" label="Select polarity" refresh_on_change="true" 34 <param name="polarity" type="select" label="Select polarity" refresh_on_change="true"
28 display="radio" dynamic_options='filter_column(library_file,col_type)' 35 display="radio" dynamic_options='filter_column(library_file,col_type)'
29 help="" /> 36 help="" />
30 </page> 37 </page>