Mercurial > repos > pieterlukasse > prims_metabolomics
diff library_lookup.xml @ 41:e67149fbff20
small changes/improvements;
new metams and xcms tools
author | pieter.lukasse@wur.nl |
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date | Thu, 06 Nov 2014 16:14:44 +0100 |
parents | 9d5f4f5f764b |
children |
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--- a/library_lookup.xml Fri Sep 19 16:14:58 2014 +0200 +++ b/library_lookup.xml Thu Nov 06 16:14:44 2014 +0100 @@ -13,16 +13,23 @@ $regression.model </command> <inputs> + <!-- Regarding the <page> items: this blocks the use of this tool in Galaxy workflows. However, + alternatives like wrapping this in conditionals, repeats (to force a refresh_on_change as this option + is not working on its own) failed since the workflow editor does not support refreshes...not does the + workflow runtime support conditionals or repeats to be set at runtime. See also + galaxy-dev mail thread "when else" in <conditional> ? RE: refresh_on_change : is this a valid attribute? Any other ideas/options??" --> <page> <param format="tabular" name="input" type="data" label="NIST identifications as tabular file" help="Select a tab delimited NIST metabolite identifications file (converted from PDF)" /> <param name="library_file" type="select" label="CAS x RI Library file" help="Select a library/lookup file containing RI values for CAS numbers on various chromatography columns " dynamic_options='get_directory_files("tool-data/shared/PRIMS-metabolomics/RI_DB_libraries")'/> + </page> + <page> <param name="col_type" type="select" label="Select column type" refresh_on_change="true" display="radio" dynamic_options='get_column_type(library_file)' help="" /> - </page> + </page> <page> <param name="polarity" type="select" label="Select polarity" refresh_on_change="true" display="radio" dynamic_options='filter_column(library_file,col_type)'