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1 import logging
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2 log = logging.getLogger( __name__ )
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3
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4
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5 def restrict_prims_metabolomics( context, tool ):
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6 """
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7 This tool filter will hide prims_metabolomics tools for non-metabolomics users.
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8 This can be enabled by adding the following to the
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9 ``app:main`` section of ``universe_wsgi.ini``::
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10
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11 tool_filters = primsfilters:restrict_prims_metabolomics
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12
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13 and by adding this file to the folder:
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14
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15 <galaxy-dist>/lib/galaxy/tools/filters
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16
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17 This is optional and can be used in case some control is desired on whom
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18 gets to see the prims_metabolomics tools. When not using this file and the
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19 settings mentioned above, all prims_metabolomics tools will be visible to
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20 all users.
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21 """
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22 # for debugging: import pydevd;pydevd.settrace("L0136815.wurnet.nl")
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23 user = context.trans.user
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24 metabolomics_tools = [ "msclust2", "combine_output", "create_poly_model", "lookup_library",
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25 "NDIStext2tabular", "rankfilterGCMS_tabular", "filter_on_rank",
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26 "export_to_metexp_tabular", "query_metexp" ]
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27 found_match = False
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28 # iterate over the tool (partial)ids and look for a match (this is compatible with tool shed given ids):
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29 for partial_id in metabolomics_tools:
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30 if tool.id.find("/"+ partial_id + "/") >= 0:
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31 found_match = True
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32 break
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33 # the second part of this if is compatible with the ids when NOT using tool shed:
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34 if found_match or tool.id in metabolomics_tools:
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35 # logging.warn( 'FILTER MATCHED: %s' %(tool.name))
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36
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37 for user_role in user.roles:
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38 if user_role.role.name == "PRIMS_METABOLOMICS":
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39 return True
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40 # not found to have the role, return false:
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41 return False
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42 else:
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43 # return true for any other tool
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44 return True |
