Mercurial > repos > pieterlukasse > prims_metabolomics2
comparison GCMS/readme.txt @ 6:4393f982d18f
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| author | pieter.lukasse@wur.nl |
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| date | Thu, 19 Mar 2015 12:22:23 +0100 |
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| 5:41f122255d14 | 6:4393f982d18f |
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| 1 ==Description== | |
| 2 Galaxy tools for analyzing a PDF-result file generated by NIST-MSSearch by calculating ranks for | |
| 3 each putative metabolite and matching with a Retention Index Database by CAS-number | |
| 4 | |
| 5 | |
| 6 ==Dependencies== | |
| 7 - Galaxy | |
| 8 - pdftotext (part of the 'poppler-utils' package (Ubuntu and Debian)) | |
| 9 - Python (>= 2.6) with the following package(s): | |
| 10 - numpy | |
| 11 - R | |
| 12 | |
| 13 | |
| 14 ==Installation== | |
| 15 | |
| 16 - Optionally run the included Python unittests to verify the dependencies: | |
| 17 nosetests galaxy-dist/tools/GCMS | |
| 18 | |
| 19 | |
| 20 | |
| 21 ==License== | |
| 22 | |
| 23 Licensing info can be found at the /LICENSE_AND_README folder files located | |
| 24 in the root of this (PRIMS-metabolomics) project. | |
| 25 |