Mercurial > repos > pieterlukasse > prims_metabolomics2
diff GCMS/readme.txt @ 6:4393f982d18f
reorganized sources
author | pieter.lukasse@wur.nl |
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date | Thu, 19 Mar 2015 12:22:23 +0100 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GCMS/readme.txt Thu Mar 19 12:22:23 2015 +0100 @@ -0,0 +1,25 @@ +==Description== +Galaxy tools for analyzing a PDF-result file generated by NIST-MSSearch by calculating ranks for +each putative metabolite and matching with a Retention Index Database by CAS-number + + +==Dependencies== +- Galaxy +- pdftotext (part of the 'poppler-utils' package (Ubuntu and Debian)) +- Python (>= 2.6) with the following package(s): + - numpy +- R + + +==Installation== + +- Optionally run the included Python unittests to verify the dependencies: + nosetests galaxy-dist/tools/GCMS + + + +==License== + +Licensing info can be found at the /LICENSE_AND_README folder files located +in the root of this (PRIMS-metabolomics) project. +