Mercurial > repos > pieterlukasse > prims_metabolomics2

changeset 13:5a753524e525

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fix for match_library
author pieter.lukasse@wur.nl
date Thu, 19 Mar 2015 15:04:56 +0100
parents 7661f5ade5c4
children 346ff9ad8c7a
files GCMS/create_model.xml GCMS/library_lookup.xml METEXPtools/query_metexp.xml MS/query_mass_repos.xml rankfilter_GCMS/rankfilterGCMS_tabular.xml
diffstat 5 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/GCMS/create_model.xml	Thu Mar 19 13:26:13 2015 +0100
+++ b/GCMS/create_model.xml	Thu Mar 19 15:04:56 2015 +0100
@@ -43,7 +43,7 @@
     <param name="plot" type="boolean" label="Create a separate plot for each model"
            help="This will create a ZIP file in the history containing PDF plots" />
   </inputs>
-  <code file="match_library.py" />
+  <code file="../match_library.py" />
   <outputs>
   	<data format="zip" label="Model Graphics of ${on_string}" name="model_graphics" >
   	    <filter>(plot)</filter>
--- a/GCMS/library_lookup.xml	Thu Mar 19 13:26:13 2015 +0100
+++ b/GCMS/library_lookup.xml	Thu Mar 19 15:04:56 2015 +0100
@@ -61,7 +61,7 @@
   <outputs>
     <data format="tabular" label="${tool.name} on" name="output" />
 </outputs>
-<code file="match_library.py" />
+<code file="../match_library.py" />
   <help>
 Performs a lookup of the RI values by matching CAS numbers from the given NIST identifications file to a library.
 If a direct match is NOT found for the preferred column name, a regression can be done to find
--- a/METEXPtools/query_metexp.xml	Thu Mar 19 13:26:13 2015 +0100
+++ b/METEXPtools/query_metexp.xml	Thu Mar 19 15:04:56 2015 +0100
@@ -46,7 +46,7 @@
   <outputs>
     <data name="output_result" format="tabular" label="${tool.name} on ${on_string}" />
   </outputs>
-  <code file="match_library.py" /> <!-- file containing get_directory_files function used above-->
+  <code file="../match_library.py" /> <!-- file containing get_directory_files function used above-->
   <help>
 .. class:: infomark  
   
--- a/MS/query_mass_repos.xml	Thu Mar 19 13:26:13 2015 +0100
+++ b/MS/query_mass_repos.xml	Thu Mar 19 15:04:56 2015 +0100
@@ -45,7 +45,7 @@
   <outputs>
     <data name="output_result" format="tabular" label="${tool.name} on ${on_string}" />
   </outputs>
-  <code file="match_library.py" /> <!-- file containing get_directory_files function used above-->
+  <code file="../match_library.py" /> <!-- file containing get_directory_files function used above-->
   <help>
 .. class:: infomark  
   
--- a/rankfilter_GCMS/rankfilterGCMS_tabular.xml	Thu Mar 19 13:26:13 2015 +0100
+++ b/rankfilter_GCMS/rankfilterGCMS_tabular.xml	Thu Mar 19 15:04:56 2015 +0100
@@ -32,7 +32,7 @@
     <data format="tabular" label="${tool.name}" name="onefile" />
   </outputs>
   <!-- file with implementation of the function get_directory_files() used above  -->
-  <code file="match_library.py" />
+  <code file="../match_library.py" />
   <configfiles>
     <configfile name="input_file">
       sample = ${sample}