diff INSTALL.r @ 0:d57322d79cfe

initial
author pieter.lukasse@wur.nl
date Thu, 06 Nov 2014 16:04:57 +0100
parents
children e6171a39dd04
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/INSTALL.r	Thu Nov 06 16:04:57 2014 +0100
@@ -0,0 +1,16 @@
+# get R http://cran.r-project.org/src/base/R-3/R-3.0.3.tar.gz
+
+# installs Bioconductor
+source("http://bioconductor.org/biocLite.R")
+biocLite()
+
+# upgrage? Some packages are "old"  and can be upgraded with: biocLite("BiocUpgrade")
+
+
+#  install metaMS and multtest for differential analysis tool (from xcms)
+biocLite("metaMS")
+biocLite("multtest")
+
+# for "multi-threading"  (actually starts multiple R processes for parallel processing):
+install.packages("snow", repos="http://cran.rstudio.com/")
+