Mercurial > repos > pieterlukasse > prims_metabolomics_r_dependencies
diff INSTALL.r @ 0:d57322d79cfe
initial
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Thu, 06 Nov 2014 16:04:57 +0100 |
| parents | |
| children | e6171a39dd04 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/INSTALL.r Thu Nov 06 16:04:57 2014 +0100 @@ -0,0 +1,16 @@ +# get R http://cran.r-project.org/src/base/R-3/R-3.0.3.tar.gz + +# installs Bioconductor +source("http://bioconductor.org/biocLite.R") +biocLite() + +# upgrage? Some packages are "old" and can be upgraded with: biocLite("BiocUpgrade") + + +# install metaMS and multtest for differential analysis tool (from xcms) +biocLite("metaMS") +biocLite("multtest") + +# for "multi-threading" (actually starts multiple R processes for parallel processing): +install.packages("snow", repos="http://cran.rstudio.com/") +