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author pieter.lukasse@wur.nl
date Thu, 06 Nov 2014 16:05:24 +0100
parents d57322d79cfe
children 16ad47f8751f
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# get  R http://cran.r-project.org/src/base/R-3/R-3.0.3.tar.gz

# installs Bioconductor
source("http://bioconductor.org/biocLite.R")
biocLite()

# upgrage? Some packages are "old"  and can be upgraded with: biocLite("BiocUpgrade")


#  install metaMS and multtest for differential analysis tool (from xcms)
biocLite("metaMS")
biocLite("multtest")

# for "multi-threading"  (actually starts multiple R processes for parallel processing):
install.packages("snow", repos="http://cran.rstudio.com/")