Mercurial > repos > pieterlukasse > prims_proteomics

comparison napq.xml @ 6:d1edc7971d48

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fixes in tool forms (<when> tags)
author pieter.lukasse@wur.nl
date Fri, 31 Jan 2014 12:11:34 +0100
parents 5d99c9d0615d
children 72d4a37869ee
comparison
equal deleted inserted replaced
5:5d99c9d0615d 6:d1edc7971d48
6 ////////////////////////// 6 //////////////////////////
7 --> 7 -->
8 <command interpreter="java -jar "> 8 <command interpreter="java -jar ">
9 NapQ.jar 9 NapQ.jar
10 -identificationsConfigFile $identificationsConfigFile 10 -identificationsConfigFile $identificationsConfigFile
11 -namingConventionCodesForSamples $namingConventionCodesForSamples 11 -namingConventionCodesForSamples "$namingConventionCodesForSamples"
12 #if $is2D_LC_MS.fractions == True 12 #if $is2D_LC_MS.fractions == True
13 -namingConventionCodesForFractions $is2D_LC_MS.namingConventionCodesForFractions 13 -namingConventionCodesForFractions "$is2D_LC_MS.namingConventionCodesForFractions"
14 #end if 14 #end if
15 -outputApml $outputApml 15 -outputApml $outputApml
16 -outputTsv $outputTsv 16 -outputTsv $outputTsv
17 -outReport $htmlReportFile 17 -outReport $htmlReportFile
18 -outReportPicturesPath $htmlReportFile.files_path 18 -outReportPicturesPath $htmlReportFile.files_path
40 <param name="namingConventionCodesForFractions" type="text" size="100" value="" 40 <param name="namingConventionCodesForFractions" type="text" size="100" value=""
41 label="Part of run/file name that identifies the 2D LC-MS fraction" 41 label="Part of run/file name that identifies the 2D LC-MS fraction"
42 help="Add the CSV list of codes that occur in the file names 42 help="Add the CSV list of codes that occur in the file names
43 and that stand for a fraction code. E.g. '_F1,_F2,_F3,etc.' Use this to avoid 43 and that stand for a fraction code. E.g. '_F1,_F2,_F3,etc.' Use this to avoid
44 that each (fraction) file is seen as a separate run."/> <!-- could do regular expressions as well but this would be hard for biologists, e.g. _F\d\b --> 44 that each (fraction) file is seen as a separate run."/> <!-- could do regular expressions as well but this would be hard for biologists, e.g. _F\d\b -->
45 </when>
46 <when value="No">
45 </when> 47 </when>
46 </conditional> 48 </conditional>
47 49
48 </inputs> 50 </inputs>
49 <configfiles> 51 <configfiles>