Mercurial > repos > pieterlukasse > prims_proteomics

diff napq.xml @ 6:d1edc7971d48

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fixes in tool forms (<when> tags)
author pieter.lukasse@wur.nl
date Fri, 31 Jan 2014 12:11:34 +0100
parents 5d99c9d0615d
children 72d4a37869ee
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--- a/napq.xml	Mon Jan 27 12:11:29 2014 +0100
+++ b/napq.xml	Fri Jan 31 12:11:34 2014 +0100
@@ -8,9 +8,9 @@
 	<command interpreter="java -jar ">
 	    NapQ.jar 
 	    -identificationsConfigFile $identificationsConfigFile
-	    -namingConventionCodesForSamples $namingConventionCodesForSamples
+	    -namingConventionCodesForSamples "$namingConventionCodesForSamples"
 	    #if $is2D_LC_MS.fractions == True
-        	-namingConventionCodesForFractions $is2D_LC_MS.namingConventionCodesForFractions
+        	-namingConventionCodesForFractions "$is2D_LC_MS.namingConventionCodesForFractions"
         #end if
 	    -outputApml $outputApml
 	    -outputTsv $outputTsv
@@ -43,6 +43,8 @@
      				and that stand for a fraction code. E.g. '_F1,_F2,_F3,etc.' Use this to avoid
      				that each (fraction) file is seen as a separate run."/> <!-- could do regular expressions as well but this would be hard for biologists, e.g. _F\d\b -->
      		</when>
+     		<when value="No">
+     		</when>
      	</conditional>     	
      	
 	</inputs>