annotate PRIMS_iTRAQ_labeled_data.ga @ 1:4719f745bf02 default tip

setting the correct dependencies to main toolshed
author pieter.lukasse@wur.nl
date Wed, 08 Jan 2014 16:38:32 +0100
parents b3ccb17adda3
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "",
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4 "format-version": "0.1",
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5 "name": "PRIMS- (iTRAQ) labeled data",
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6 "steps": {
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7 "0": {
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8 "annotation": "",
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9 "id": 0,
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10 "input_connections": {},
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11 "inputs": [
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12 {
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13 "description": "",
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14 "name": "Input Dataset"
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15 }
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16 ],
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17 "name": "Input dataset",
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18 "outputs": [],
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27 "type": "data_input",
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29 },
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30 "1": {
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31 "annotation": "",
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32 "id": 1,
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33 "input_connections": {},
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34 "inputs": [
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35 {
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36 "description": "",
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37 "name": "Input Dataset"
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38 }
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39 ],
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40 "name": "Input dataset",
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41 "outputs": [],
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50 "type": "data_input",
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52 },
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53 "2": {
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54 "annotation": "",
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55 "id": 2,
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56 "input_connections": {
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57 "database": {
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58 "id": 0,
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59 "output_name": "output"
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60 },
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61 "fileType|inputFile": {
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63 "output_name": "output"
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64 }
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65 },
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66 "inputs": [
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67 {
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68 "description": "runtime parameter for tool X!Tandem",
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69 "name": "precursor_mass_tolerance_lower"
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70 },
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71 {
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72 "description": "runtime parameter for tool X!Tandem",
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73 "name": "precursor_mass_tolerance_upper"
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74 },
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75 {
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76 "description": "runtime parameter for tool X!Tandem",
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77 "name": "precursor_error_units"
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78 }
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79 ],
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80 "name": "X!Tandem",
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81 "outputs": [
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98 },
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100 "tool_errors": null,
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101 "tool_id": "toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_masscomb/masscomb_xtandem200/2.0.0",
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103 "tool_version": "2.0.0",
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104 "type": "tool",
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106 },
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107 "3": {
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108 "annotation": "",
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110 "input_connections": {
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111 "fileType|inputFormatType|inputFile": {
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113 "output_name": "outputFile"
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114 }
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115 },
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116 "inputs": [],
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117 "name": "DB search converter",
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118 "outputs": [
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119 {
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132 "tool_version": "1.0.1",
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133 "type": "tool",
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134 "user_outputs": []
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135 },
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136 "4": {
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137 "annotation": "",
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152 {
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310 "user_outputs": []
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pieter.lukasse@wur.nl
parents:
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311 }
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pieter.lukasse@wur.nl
parents:
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312 }
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pieter.lukasse@wur.nl
parents:
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313 }