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comparison test-data/test_MACS2.1.1_peaks.xls @ 3:4124781932db draft

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Updated to MACS 2.1.1 and use conda for dependency resolution.
author pjbriggs
date Tue, 20 Mar 2018 11:25:04 -0400
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2:00d73c812399 3:4124781932db
1 #peaks file
2 # This file is generated by MACS version 2.1.1.20160309
3 # Command line: callpeak -t /tmp/tmpHxmla3/files/000/dataset_9.dat -c /tmp/tmpHxmla3/files/000/dataset_10.dat --format=BED --name=test_MACS2.1.1 --bw=300 --gsize=775000000.0 --nomodel --extsize=243 --qvalue=0.05 -B --SPMR --mfold 5 50 --keep-dup 1
4 # ARGUMENTS LIST:
5 # name = test_MACS2.1.1
6 # format = BED
7 # ChIP-seq file = ['/tmp/tmpHxmla3/files/000/dataset_9.dat']
8 # control file = ['/tmp/tmpHxmla3/files/000/dataset_10.dat']
9 # effective genome size = 7.75e+08
10 # band width = 300
11 # model fold = [5, 50]
12 # qvalue cutoff = 5.00e-02
13 # Larger dataset will be scaled towards smaller dataset.
14 # Range for calculating regional lambda is: 1000 bps and 10000 bps
15 # Broad region calling is off
16 # Paired-End mode is off
17 # MACS will save fragment pileup signal per million reads
18
19 # tag size is determined as 50 bps
20 # total tags in treatment: 50
21 # tags after filtering in treatment: 50
22 # maximum duplicate tags at the same position in treatment = 1
23 # Redundant rate in treatment: 0.00
24 # total tags in control: 50
25 # tags after filtering in control: 50
26 # maximum duplicate tags at the same position in control = 1
27 # Redundant rate in control: 0.00
28 # d = 243
29 #chr start end length abs_summit pileup -log10(pvalue) fold_enrichment -log10(qvalue) name
30 chr26 4118914 4119282 369 4119130 9.00 9.13132 6.31632 2.51561 test_MACS2.1.1_peak_1