Mercurial > repos > pjbriggs > macs21
view test-data/test_MACS2.1.1_peaks.xls @ 3:4124781932db draft
Updated to MACS 2.1.1 and use conda for dependency resolution.
author | pjbriggs |
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date | Tue, 20 Mar 2018 11:25:04 -0400 |
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#peaks file # This file is generated by MACS version 2.1.1.20160309 # Command line: callpeak -t /tmp/tmpHxmla3/files/000/dataset_9.dat -c /tmp/tmpHxmla3/files/000/dataset_10.dat --format=BED --name=test_MACS2.1.1 --bw=300 --gsize=775000000.0 --nomodel --extsize=243 --qvalue=0.05 -B --SPMR --mfold 5 50 --keep-dup 1 # ARGUMENTS LIST: # name = test_MACS2.1.1 # format = BED # ChIP-seq file = ['/tmp/tmpHxmla3/files/000/dataset_9.dat'] # control file = ['/tmp/tmpHxmla3/files/000/dataset_10.dat'] # effective genome size = 7.75e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 5.00e-02 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 1000 bps and 10000 bps # Broad region calling is off # Paired-End mode is off # MACS will save fragment pileup signal per million reads # tag size is determined as 50 bps # total tags in treatment: 50 # tags after filtering in treatment: 50 # maximum duplicate tags at the same position in treatment = 1 # Redundant rate in treatment: 0.00 # total tags in control: 50 # tags after filtering in control: 50 # maximum duplicate tags at the same position in control = 1 # Redundant rate in control: 0.00 # d = 243 #chr start end length abs_summit pileup -log10(pvalue) fold_enrichment -log10(qvalue) name chr26 4118914 4119282 369 4119130 9.00 9.13132 6.31632 2.51561 test_MACS2.1.1_peak_1