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annotate test-data/illuminaPE_microsats.out @ 0:3f908e7fff4f draft

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Uploaded first version to toolshed.
author pjbriggs
date Thu, 11 Dec 2014 09:23:24 -0500
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children b6ccc7dd7b02
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3f908e7fff4f Uploaded first version to toolshed.
pjbriggs
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1 readPairID Motifs(bases) Bases in all Motifs Possible Extended Possible Spanning Primers found (1=y,0=n) F Primer Name Forward Primer R Primer Name Reverse Primer Amplicon Motifs Number motif bases in amplicon Primers on sep reads Extend with primers Spand with primers Occurances of Forward Primer in Reads Occurances of Reverse Primer in Reads Occurances of Amplifiable Primer Pair in Reads Occurances of Amplifiable Primer Pair in PALs
3f908e7fff4f Uploaded first version to toolshed.
pjbriggs
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2 ILLUMINA-545855_0049_FC61RLR:2:1:8044:1926#0 AT(12) 12 0
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pjbriggs
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3 ILLUMINA-545855_0049_FC61RLR:2:1:1978:1220#0 AC(12) 12 1 test_3 GCAGTAAACAAAGGCAAAGGG test_4 CCTGGGCAGAGGTGTTCC AC(12) 12 1 1 1 1 1
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pjbriggs
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4 ILLUMINA-545855_0049_FC61RLR:2:1:5879:1238#0 AT(12) 12 0
3f908e7fff4f Uploaded first version to toolshed.
pjbriggs
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5 ILLUMINA-545855_0049_FC61RLR:2:1:8899:1514#0 AC(12) AC(12) 24 1 test_2 TCTTTATCTAAACACATCCTGAAATACC test_1 AAACGCAATTATTTTGAGATGTCC AC(12) AC(12) 24 1 1 2 1 1
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pjbriggs
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6 ILLUMINA-545855_0049_FC61RLR:2:1:10979:1695#0 TC(14) 14 1 test_7 TTCTCCCACTATATTTTGCATTGG test_8 TCCAGACTGAAGCTACCCTGG TC(14) 14 1 1 1 1 1
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pjbriggs
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7 ILLUMINA-545855_0049_FC61RLR:2:1:5626:1554#0 AT(14) AC(16) AC(16) AT(12) 58 0
3f908e7fff4f Uploaded first version to toolshed.
pjbriggs
parents:
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8 ILLUMINA-545855_0049_FC61RLR:2:1:8157:1636#0 AC(12) 12 1 test_5 AAGTACAGTGGGGAGGCTGG test_6 TTTTCTACACAGCTCAAGTAGCCC AC(12) 12 1 1 1 1 1
3f908e7fff4f Uploaded first version to toolshed.
pjbriggs
parents:
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9 ILLUMINA-545855_0049_FC61RLR:2:1:19063:1614#0 AT(14) AT(14) AT(14) AT(14) 56 0
3f908e7fff4f Uploaded first version to toolshed.
pjbriggs
parents:
diff changeset
10 ILLUMINA-545855_0049_FC61RLR:2:1:17449:1584#0 AC(36) 36 0
3f908e7fff4f Uploaded first version to toolshed.
pjbriggs
parents:
diff changeset
11 ILLUMINA-545855_0049_FC61RLR:2:1:6204:1090#0 TC(12) 12 0