Mercurial > repos > pjbriggs > pal_finder

annotate test-data/illuminaPE_microsat_types.out.re_match @ 8:4e625d3672ba draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
author pjbriggs
date Wed, 16 May 2018 07:39:16 -0400
parents 5e133b7b79a6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
7
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
1 allExtended\:\ 0
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
2 allSpan\:\ 0
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
3 broken\:\ 2
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
4 compound\:\ 2
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
5 readsWithMicrosat\:\ 13
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
6 totalBases\:\ 2320
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
7 totalReads\:\ 20\ \(2\ x\ 10\)
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
8
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
9
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
10 Microsat\ Type\ monomer\ length\ total\ loci\ loci\ w\/\ primers\ reads\ with\ loci\ total\ bases\ extended\ extended\ w\/\ primers\ spanning\ spanning\ w\/\ primers
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
11 (AC\ 2\ 7\ 4\ 7\ 116\ 0\ 0\ 0\ 0)?
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
12 (AG\ 2\ 0\ 0\ 0\ 0\ 0\ 0\ 0\ 0)?
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
13 (AT\ 2\ 8\ 0\ 6\ 106\ 0\ 0\ 0\ 0)?
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
14 CG\ 2\ 0\ 0\ 0\ 0\ 0\ 0\ 0\ 0
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
15 TC\ 2\ 2\ 1\ 2\ 26\ \ \ \
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
16 (TG\ 2\ 7\ 4\ 7\ 116\ \ \ \ )?