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annotate tool_dependencies.xml @ 1:771ebe02636f draft

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Uploaded version 0.02.04.2: fix bug that causes tool to fail when prefix includes spaces; add explicit dependency on Perl 5.16.3.
author pjbriggs
date Mon, 23 Mar 2015 07:01:37 -0400
parents 3f908e7fff4f
children b6ccc7dd7b02
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0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="pal_finder" version="0.02.04">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://sourceforge.net/projects/palfinder/files/pal_finder_v0.02.04.tar.gz</action>
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7 <action type="move_file">
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8 <source>pal_finder_v0.02.04.pl</source>
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9 <destination>$INSTALL_DIR/bin</destination>
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10 </action>
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11 <action type="move_file">
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12 <source>config.txt</source>
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13 <destination>$INSTALL_DIR/data</destination>
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14 </action>
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15 <action type="move_file">
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16 <source>simple.ref</source>
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17 <destination>$INSTALL_DIR/data</destination>
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18 </action>
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19 <action type="set_environment">
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20 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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21 </action>
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22 <action type="set_environment">
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23 <environment_variable name="PALFINDER_SCRIPT_DIR" action="set_to">$INSTALL_DIR/bin</environment_variable>
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24 </action>
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25 <action type="set_environment">
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26 <environment_variable name="PALFINDER_DATA_DIR" action="set_to">$INSTALL_DIR/data</environment_variable>
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27 </action>
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28 </actions>
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29 </install>
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30 <readme>pal_finder also needs Perl</readme>
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31 </package>
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32 <package name="perl" version="5.16.3">
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33 <install version="1.0">
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34 <actions>
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35 <!-- install perl -->
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36 <action type="download_by_url">http://www.cpan.org/src/5.0/perl-5.16.3.tar.gz</action>
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37 <action type="shell_command">./Configure -des -Dprefix=$INSTALL_DIR -Dstartperl='#!/usr/bin/env perl'</action>
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38 <action type="make_install" />
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39 <action type="set_environment">
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40 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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41 </action>
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42 </actions>
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43 </install>
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44 <readme>
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45 Perl 5 is a highly capable, feature-rich programming language with over 25 years of
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46 development:
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47
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48 http://www.perl.org/
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49 </readme>
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50 </package>
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51 <package name="primer3_core" version="2.0.0">
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52 <install version="1.0">
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53 <actions>
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54 <action type="download_by_url">https://sourceforge.net/projects/primer3/files/primer3/2.0.0-alpha/primer3-2.0.0-alpha.tar.gz</action>
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55 <action type="shell_command">make -C src -f Makefile</action>
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56 <action type="move_file">
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57 <source>src/primer3_core</source>
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58 <destination>$INSTALL_DIR/bin</destination>
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59 </action>
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60 <action type="set_environment">
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61 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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62 </action>
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63 </actions>
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64 </install>
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65 <readme>primer3_core</readme>
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66 </package>
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67 </tool_dependency>