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annotate test-data/Illumina_SG_R2.fastqsolexa @ 15:32f1f56bd970 draft

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Updated for Trimmomatic 0.39 and adds quality score options.
author pjbriggs
date Thu, 02 Mar 2023 15:24:24 +0000
parents 59054f086eca
children
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11
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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1 @MISEQ:1:000000000-A2Y1L:1:1101:19264:2433 2:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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2 GCCGATATGCAGATGCCGTTGATTGCTGCCAGCATAGCAGCCATTGCCGGCATATCCTTTGTGACTGTGCGCCGACGCAAGAAGGCGGCCCAGATAACCTAGCCCAGAAACGATACGGCGTCTCTACCCTCATCTGTTATGCTGATCCAGTGATTCTTGCCTACCTTCTTTACGGTGATGTAATGCCAGTCGTTGGCAAGCGGGTCTATAATATTCTTGGCGAGGCTTGCAAACCTGGCCTGCGAGTGGT
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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3 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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4 ^^`^^`aacccccccceedddeghhhhgghhgheghhgggegghhhhhgggegghhhhhheeegghhgfcdgg``dggggeggggc\daadddddeeeeddddbdeeddeeeWH^^``^Z]cdddeeeeH^W`dbedeeeeeed`dddbeeebdddeeeeeedded`bddb^b``bdeddded^O^d`b```dd``bdd`HMSWMEOHPYY`^b``^bbYYSEESEOOEWY^`W^d>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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5 @MISEQ:1:000000000-A2Y1L:1:1101:18667:2435 2:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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6 GATGACATCAGCACAGGTTCCGCTTCCGCTGTCGCAACGACGTGGCTGCCATCGATTATATTCAATTCTGAGTGCTGCCGTAGGGCTAGATGTAAGACTCACGTTCGGCGACCAGATTAGTCGGTAGTGGCATGTGACTCCCCGTTGTAGACTACGATTAGACCCATCTCTCTGGCCACAGCTAACTCGCTCAACTCTCATCCCTCCTGGGGTATCTACCAGCGATACGCGTAGAACTCGTGCCTCATGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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7 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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8 ^^^^^aaaccccccccfeefffgggghggggggghgggghgabddgeeggghhgeggghhhhhhhgheafefegggghgd_dddggeeggee^begggggfffffffffffffffffffdbfffZddYbdfff^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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9 @MISEQ:1:000000000-A2Y1L:1:1101:17523:2436 2:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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10 GAATATAGAAACGGGAGTATAGTGGTAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGNNCGCCGCTAAGACTGCCGTCAAATTCCTGAGCGGTAGTGATGCTGTCTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGGGGGCGCCGGCACATTCAAAAAAAAAAAACAGGAAAATGACATAGGCGTGTGTGA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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11 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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12 ^^```aaacccccdccffbeffggheeggg>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>UU^\>>SUU__dddfbffb]bd[dfddfdfbdfdffffWW[^P^b^dfbd^ddb^bb^bbdffbffbfbW^bb`b[``EQQQW]HOHPbY^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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13 @MISEQ:1:000000000-A2Y1L:1:1101:15489:2437 2:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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14 GTCCACGTGAAATCCCGAGCGTCCCTCTCCCTCCCGAGAACCCGGTCTATATCCCACGATTTTTGACCGAACAAGGATTGACCTCATCCAACTCCGAAGCCCGCCGCCTACTTTCCCAAGGCGCGATAAAGATTGATGGAACCCCGCCCAAGGCTGACGAAATCCCCGCCAACGAACTGTCGGGCCGACCCATTCAAGTGGGGAAAAAAACCTTTCCCCGGGTTGACAAACCGCCAAACAACCTCACCAA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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15 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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16 ^^^^Xa^^^`cX^accddccccgggggegegeegggggggggdgg]bdfggefggfgg\eggggbJbfdabb[be_KSbe_beaeeeece^aSac__cG]bdUaaGGMGMY```dd^`^`>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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17 @MISEQ:1:000000000-A2Y1L:1:1101:18851:2442 2:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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18 TCTCCTCAGTACGGGGGAGGAGGTTCGCTCGGCGGACGTGCGGCCCTACGCCAGACTCTACCACATGGTTCAGCAGGAGCTGGAGCACCGCGCTGTGTCCGGGGACTGGGAATACACCATCAGCCCCGGCGAGGAGTGGCAAGAGACGGAGCCTCTGCAACCAGCAGAGGTTGCCAAGCTGGACTATCACAGCTACGTCACCAGACGCTTCATGAAGGTCACCCAGTCTGACCCTGTGAACCAGGCCGGG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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19 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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20 `^^`^aaaccccccccffffffgdeggfdggghgdgggggcgadgfeeedffcddcfffffdffddbd^dfbdfdfffbdddffbddffScZZS`ffffffW]ff`^dfffddfddfffbffdfdffffcW[``cdbdbdff^bbbYWbbEEWYbY^bbdH^GObbOYH^YbY^bbbW^bbdbXHYYbbbb^bHYYMbdffdbXXbSEGGMOOHYbY^HPOYbb>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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21 @MISEQ:1:000000000-A2Y1L:1:1101:15290:2442 2:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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22 GCGTGGATTTGATTCGGTTTATGGGGCGCGGCCGCTGAGGCGGGTCATTCAGACGGAGATTGAGAATCCGCTAGCGGATAAGATTTTGCGGGGGGAGTTGGCGGAGGGCGATCGCTTGATGCTTGATTATGGAGGGGAGGGGGAGAAGATAGGTTTTACGAAAATAGAGGCGGAGGGGTCGGCGGCATAGAGGGTAATTTTTTGGGTTTTTTTCTGTGTCTTATACACAACTGAACGTGCCGACGAGCGG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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23 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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24 ^^^^^_^accccccccedddeeghhgdggggcgggggdggggggW`ceeeceecPcZ]PKZZZZRaKRaZZHYaZPZEEOYYOHPY`HYZ]ccESEWMYY``]cQQ]c`]EEOMMOW^HY`HP^YHO^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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25 @MISEQ:1:000000000-A2Y1L:1:1101:18106:2444 2:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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26 GAGTTACTATTACAGAGTGGAGCTAATGTACTGGCAGTTGACTGCAAAAGAAATGCTCCAATTCATGTTGCATGTGCAAATATGAGCTTAGAGTGTTTAAAGATAATTTTGTGCCACAAAAAATGCAACCCAAACCAACAAAATGCAGTGGGAGACACTCCACTCCACACCTTATGCAGTTTGGGGACTTGTGATATGAGAATACTACCTGTCTCTTATACACATCTGACGCTGCCGACGAGCGAACAAG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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27 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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28 ^^^^^aaaccccccccfbefefhhhhhgeghhhhghgef\dgghfhhhheghgcfgfggghghg\bfgffgegggegefggegN`bceff^ed^bceeggggghhgeggh]bdcfeggggggggceggegggee`eeffffffdcdf]]c`bbZ^dff]bdd`]`d`bbdd^YbYYbbYYYbYbd[b[XbY^b^H^bddbbbHYb^b^dY^YbYbYbbbbdY^bPHOHPPMWbGQ^ESW]f>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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29 @MISEQ:1:000000000-A2Y1L:1:1101:15892:2446 2:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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30 GTATTGCTGGCACCATCAGTCACCGTGTAGTGTATTCTATCGATTCCGTCACGCTGGCCCTTGAGCGTGCCCGAATCATACGTTATGGTGGTACCTGATACCGTGGCACTAGTGCCGTCGGTGTCTGCGCCATCCGTACGGTCGAACACCACCACGAGGGTATCGGCGTCCTGGTTTGCGTCGGGGATGCGGTCACCCTCTAAAAGATTTATGGAGGTCGTCTCTTGTGTCTGGGCCGGGGGGAAGATGT
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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31 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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32 ^^^^^aaaccccccccffffffhhghheggghgghegfgffgghghhcdeegde_ceghhghhhfg`bcbeeggghghhghgfgggafefddggggegeeggcecbdffeffefff_caddddfb]bddffffffdO^bcfffc]ddQbdWbdfdd[]]]GYbddfc`ESQWbdY^XbbSWQW]ES[GOY]EOSGP^dHWYPbb^^GYbbddbbHHWGOTSW^bHY^YHOPOHYbb>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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33 @MISEQ:1:000000000-A2Y1L:1:1101:17903:2450 2:N:0:TAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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34 GGCCAACACTGTGGTCACTATCTCTGGCACTGGTCTGCTACCACATGGAGTTGACACCGGAGACCCAATCACCACAGCAACAGTGTGGATTGACCACACCCCCTGCACCTGTCTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCCGTGGGCGCCGCATCATTAAAAAAAAAAAAAAAAAACATAACTCTCAAACGCGAATAGAGCAAGAAACAGACAGCTAAAGTACAAACAAT
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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35 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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36 TT[^^^^^cccaaccaeeeeeebgghhgghhhhhhhgfgghhhhggfghhgegghhhhgggbcghhhgeeghhhhhbeeghgdbfbfdghg\eggggggggggeZeeeeecceeeeeeedeeeededace`dd`dd_ddcc]cccWWOY^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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37 @MISEQ:1:000000000-A2Y1L:1:1101:15113:2451 2:N:0:TAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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38 GAGGGGAGGAGGGGAAGGGAGAGGGGAAGAGAGGAGAGGAGAGGAGGAGGAGAGAAGGGGGAATGAGCAAGTAACATAATTACATAGCTGTGTCTGAATCTCTTTGAGCACCCTACCTCGGCATAGGAGGCTAGCTGGTGAGGGAGGGAGGGGCAGACTGACAGGCCGAGGATGGCCTTGTGGTTGGCAAACTCCGTGGGGCGAGTCTGGGCTGCTGCATGCGCATCTGAGACTGGCTCTTGTACACATC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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39 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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40 ^^^^^_X_a^a^aaaadddea__ddgdb^aeLbd_ccdgKTJTbK]_JbdJ[^\dLbedbdggcacK^ceeKScccaeZ\aZZaacZcKaS\adddddbaKKaaZ^b^bddddHZZbY`b^bZ^bbY`ddd^dW`bdYOY`^``W`SM^^W^WQSWGWY`bddd^dGSZ^Z^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>