Mercurial > repos > pjbriggs > trimmomatic

comparison package_trimmomatic.sh @ 3:f8a9a5eaca8a draft

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Updated to version 0.32.3: add support for FASTQ pairs (dataset collections)
author pjbriggs
date Wed, 23 Sep 2015 08:59:23 -0400
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2:a60283899c6d 3:f8a9a5eaca8a
1 #!/bin/sh
2 #
3 # Package Trimmomatic tool files into tgz file for upload to
4 # Galaxy toolshed
5 #
6 TGZ=trimmomatic.tgz
7 if [ -f $TGZ ] ; then
8 echo $TGZ: already exists, please remove >&2
9 exit 1
10 fi
11 tar cvzf $TGZ \
12 README.rst \
13 trimmomatic.xml \
14 trimmomatic.sh \
15 tool_dependencies.xml \
16 test-data
17 if [ -f $TGZ ] ; then
18 echo Created $TGZ
19 else
20 echo Failed to created $TGZ >&2
21 exit 1
22 fi
23 ##
24 #